miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 134394 1.1 0.001376
Target:  5'- gGGACUACCCCCAGAGCCCGACCACCGa -3'
miRNA:   3'- -CCUGAUGGGGGUCUCGGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 41426 0.85 0.079258
Target:  5'- cGGCUugACCCCCGucuGGGCCCGGCCGCCGc -3'
miRNA:   3'- cCUGA--UGGGGGU---CUCGGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 27398 0.77 0.231993
Target:  5'- gGGGCUGCUgCCAGAcgcccgguGCCCGGCCACg- -3'
miRNA:   3'- -CCUGAUGGgGGUCU--------CGGGCUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 66416 0.77 0.242911
Target:  5'- gGGugUgcggGCCCgUGGAGCCCGccGCCACCGg -3'
miRNA:   3'- -CCugA----UGGGgGUCUCGGGC--UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 162800 0.76 0.272076
Target:  5'- gGGGCUgACCCCCGGGGCCguGCUGCCa -3'
miRNA:   3'- -CCUGA-UGGGGGUCUCGGgcUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 52778 0.74 0.345245
Target:  5'- gGGACUcgcggcggcggcgGCCCUCGGGGCCCGGgCGCa- -3'
miRNA:   3'- -CCUGA-------------UGGGGGUCUCGGGCUgGUGgc -5'
4007 5' -60.3 NC_001650.1 + 153758 0.74 0.345978
Target:  5'- uGGGCgagACCCCCcuGAGCCgccccagaaaGGCCACCGu -3'
miRNA:   3'- -CCUGa--UGGGGGu-CUCGGg---------CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 38477 0.74 0.360869
Target:  5'- cGGAcCUGCCCgCCAuGGCCCuGCCGCCc -3'
miRNA:   3'- -CCU-GAUGGG-GGUcUCGGGcUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 76889 0.73 0.391966
Target:  5'- gGGGCUGCCCCCGGGGgUCuccguggggGACCugCu -3'
miRNA:   3'- -CCUGAUGGGGGUCUCgGG---------CUGGugGc -5'
4007 5' -60.3 NC_001650.1 + 160832 0.73 0.391966
Target:  5'- aGGGggGCCCgCCgAGGGUUCGACCACCa -3'
miRNA:   3'- -CCUgaUGGG-GG-UCUCGGGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 133931 0.73 0.400008
Target:  5'- gGGGCgcCCCCCAGAcCCCGGCaggcgGCCGc -3'
miRNA:   3'- -CCUGauGGGGGUCUcGGGCUGg----UGGC- -5'
4007 5' -60.3 NC_001650.1 + 46591 0.73 0.407336
Target:  5'- -uGCUGCCCCCAGAuauaaagaucaucGCCCccACCACCu -3'
miRNA:   3'- ccUGAUGGGGGUCU-------------CGGGc-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 27765 0.73 0.408155
Target:  5'- uGGACacuucUGCCCCCAGGcucacGCCCGAgCugCa -3'
miRNA:   3'- -CCUG-----AUGGGGGUCU-----CGGGCUgGugGc -5'
4007 5' -60.3 NC_001650.1 + 115465 0.73 0.424756
Target:  5'- gGGGCaaguacGCCCCCcgGGAGaCCCGgGCCACCa -3'
miRNA:   3'- -CCUGa-----UGGGGG--UCUC-GGGC-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 157085 0.72 0.433207
Target:  5'- aGGACUGCCUcuCCAGGGcCCCGAUgAggcCCGg -3'
miRNA:   3'- -CCUGAUGGG--GGUCUC-GGGCUGgU---GGC- -5'
4007 5' -60.3 NC_001650.1 + 12794 0.72 0.441754
Target:  5'- cGGAggGCCUCCGGAGCCCcAUgGCUGg -3'
miRNA:   3'- -CCUgaUGGGGGUCUCGGGcUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 179501 0.72 0.441754
Target:  5'- cGGAggGCCUCCGGAGCCCcAUgGCUGg -3'
miRNA:   3'- -CCUgaUGGGGGUCUCGGGcUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 124219 0.72 0.450396
Target:  5'- gGGACgugcaggGCCUgaUCGGGGCCCaGACCGCCc -3'
miRNA:   3'- -CCUGa------UGGG--GGUCUCGGG-CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 68954 0.72 0.450396
Target:  5'- uGGCUACCaCCCu--GCCCGGCCuggcuCCGg -3'
miRNA:   3'- cCUGAUGG-GGGucuCGGGCUGGu----GGC- -5'
4007 5' -60.3 NC_001650.1 + 134297 0.72 0.450396
Target:  5'- aGGC--CCCCCAGGGCCaGACUACCc -3'
miRNA:   3'- cCUGauGGGGGUCUCGGgCUGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.