miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 11857 0.68 0.654136
Target:  5'- gGGGCUACCCaCUA-AGCCCcgggggucuaagggGGCCGCCc -3'
miRNA:   3'- -CCUGAUGGG-GGUcUCGGG--------------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 178564 0.68 0.654136
Target:  5'- gGGGCUACCCaCUA-AGCCCcgggggucuaagggGGCCGCCc -3'
miRNA:   3'- -CCUGAUGGG-GGUcUCGGG--------------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 57210 0.68 0.657045
Target:  5'- -cACUGCCCCCcGGGCucCCGACcCGCgGa -3'
miRNA:   3'- ccUGAUGGGGGuCUCG--GGCUG-GUGgC- -5'
4007 5' -60.3 NC_001650.1 + 45345 0.68 0.657045
Target:  5'- -aGCUcGCCCCCGGAGCUCGGuucccaaacCCAacCCGg -3'
miRNA:   3'- ccUGA-UGGGGGUCUCGGGCU---------GGU--GGC- -5'
4007 5' -60.3 NC_001650.1 + 174646 0.68 0.657045
Target:  5'- uGGACU-CCCCCAuuGGGCCCccguguguaAUCACCa -3'
miRNA:   3'- -CCUGAuGGGGGU--CUCGGGc--------UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 36544 0.68 0.657045
Target:  5'- aGGuac-CCCCCAGAGCggcucCCGGCCGCg- -3'
miRNA:   3'- -CCugauGGGGGUCUCG-----GGCUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 125051 0.68 0.666728
Target:  5'- cGGGCgggGCgCCUc--GCCCGGCCAUCGg -3'
miRNA:   3'- -CCUGa--UGgGGGucuCGGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 180612 0.68 0.675421
Target:  5'- aGGCUuCCCCCGGAgagaggcGCCCccugGACCcCCGg -3'
miRNA:   3'- cCUGAuGGGGGUCU-------CGGG----CUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 126667 0.68 0.676386
Target:  5'- cGGGCU-CCCaCCGGAcgaaaaguggcuGCCCauGACUGCCGa -3'
miRNA:   3'- -CCUGAuGGG-GGUCU------------CGGG--CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 126470 0.68 0.676386
Target:  5'- cGGGCUAcuCCCCCGucGCCC-ACC-CCGc -3'
miRNA:   3'- -CCUGAU--GGGGGUcuCGGGcUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 145649 0.68 0.676386
Target:  5'- aGGGC-ACCCCCAGccccauguccCCCGAgCGCUGg -3'
miRNA:   3'- -CCUGaUGGGGGUCuc--------GGGCUgGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 105142 0.68 0.676386
Target:  5'- cGGA--GCCaggCCCGGGGCCCGAC-GCCu -3'
miRNA:   3'- -CCUgaUGG---GGGUCUCGGGCUGgUGGc -5'
4007 5' -60.3 NC_001650.1 + 55079 0.68 0.676386
Target:  5'- aGGGCcGCCCCCGuGucCUCGGCC-CCGg -3'
miRNA:   3'- -CCUGaUGGGGGU-CucGGGCUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 112632 0.68 0.68505
Target:  5'- gGGGgUggACCUCCaguuugaGGAGCUCGugCGCCGa -3'
miRNA:   3'- -CCUgA--UGGGGG-------UCUCGGGCugGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 50342 0.68 0.68601
Target:  5'- gGGGCgGCCUCUAGAGgC-GACCGCUGc -3'
miRNA:   3'- -CCUGaUGGGGGUCUCgGgCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 27707 0.68 0.68601
Target:  5'- -cACUcGCCCCCcGGGCCUGACUcCCu -3'
miRNA:   3'- ccUGA-UGGGGGuCUCGGGCUGGuGGc -5'
4007 5' -60.3 NC_001650.1 + 58579 0.68 0.68601
Target:  5'- aGAaucGCCCUCGGGGCCCGccucgaucGCCAUCa -3'
miRNA:   3'- cCUga-UGGGGGUCUCGGGC--------UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 134698 0.68 0.695595
Target:  5'- aGGCUGacCCCCCGGAuGCCCcagaGGCgGCUGa -3'
miRNA:   3'- cCUGAU--GGGGGUCU-CGGG----CUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 109487 0.68 0.695595
Target:  5'- cGugUGCCaCCCGGGGUCgccggacaaGGCCGCCu -3'
miRNA:   3'- cCugAUGG-GGGUCUCGGg--------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 127399 0.68 0.695595
Target:  5'- aGGA--GCCCCgAGAGCCCGG--ACCu -3'
miRNA:   3'- -CCUgaUGGGGgUCUCGGGCUggUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.