miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 134698 0.68 0.695595
Target:  5'- aGGCUGacCCCCCGGAuGCCCcagaGGCgGCUGa -3'
miRNA:   3'- cCUGAU--GGGGGUCU-CGGG----CUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 161538 0.68 0.695595
Target:  5'- uGGACgGCCgCCAGgauggaGGCCa-GCCGCCGg -3'
miRNA:   3'- -CCUGaUGGgGGUC------UCGGgcUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 56162 0.68 0.695595
Target:  5'- ----aGCCCCUcGGGUCCG-CCACCGu -3'
miRNA:   3'- ccugaUGGGGGuCUCGGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 134100 0.68 0.702277
Target:  5'- aGGCcaUGCCCgCAGAuagagagaucaaucGCCCGcACCACCa -3'
miRNA:   3'- cCUG--AUGGGgGUCU--------------CGGGC-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 109165 0.68 0.704181
Target:  5'- cGGcCUGCCCCC--GGCCCGAgUgggacgaGCCGu -3'
miRNA:   3'- -CCuGAUGGGGGucUCGGGCUgG-------UGGC- -5'
4007 5' -60.3 NC_001650.1 + 31975 0.68 0.705132
Target:  5'- gGGAgCUGCCUCgCGGAGUCCG-CCuCUGg -3'
miRNA:   3'- -CCU-GAUGGGG-GUCUCGGGCuGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 136065 0.68 0.705132
Target:  5'- -uACU-CCCCCAGccCCgCGGCCGCCa -3'
miRNA:   3'- ccUGAuGGGGGUCucGG-GCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 106258 0.68 0.705132
Target:  5'- uGGGCgcgacgGCCCCuCGGuGCCuCGcaGCCGCCc -3'
miRNA:   3'- -CCUGa-----UGGGG-GUCuCGG-GC--UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 107181 0.68 0.705132
Target:  5'- cGGGCU-CCCCCGaGGCCCagcGCgGCCu -3'
miRNA:   3'- -CCUGAuGGGGGUcUCGGGc--UGgUGGc -5'
4007 5' -60.3 NC_001650.1 + 51796 0.68 0.708932
Target:  5'- cGGcCUGCCUCCcgaAGAccuccaccuccucgcGCCCGGCCagGCCGu -3'
miRNA:   3'- -CCuGAUGGGGG---UCU---------------CGGGCUGG--UGGC- -5'
4007 5' -60.3 NC_001650.1 + 13905 0.67 0.713669
Target:  5'- aGGCUuCCCCCGGAgagaggcGCCCcccugGACCcCCGg -3'
miRNA:   3'- cCUGAuGGGGGUCU-------CGGG-----CUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 82500 0.67 0.714614
Target:  5'- cGACgACCCCgAGuGCCUGuACCGCgCGc -3'
miRNA:   3'- cCUGaUGGGGgUCuCGGGC-UGGUG-GC- -5'
4007 5' -60.3 NC_001650.1 + 147544 0.67 0.714614
Target:  5'- aGGAUguaGCCCUCcc-GCCCGGCCACg- -3'
miRNA:   3'- -CCUGa--UGGGGGucuCGGGCUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 76953 0.67 0.714614
Target:  5'- aGACcaccGCCCCCAu-GCCCGugC-CCGa -3'
miRNA:   3'- cCUGa---UGGGGGUcuCGGGCugGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 69777 0.67 0.721214
Target:  5'- aGGAa-ACCCCCaagcAGaAGCCCGccaaggcaaagcccGCCGCCGc -3'
miRNA:   3'- -CCUgaUGGGGG----UC-UCGGGC--------------UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 5829 0.67 0.724032
Target:  5'- uGGGCagGCCCCCuaGGCCCccauugGGCCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGucUCGGG------CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 172536 0.67 0.724032
Target:  5'- uGGGCagGCCCCCuaGGCCCccauugGGCCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGucUCGGG------CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 155678 0.67 0.724032
Target:  5'- gGGACgagGCCggucCUCGGGGCCC-ACCACgGa -3'
miRNA:   3'- -CCUGa--UGG----GGGUCUCGGGcUGGUGgC- -5'
4007 5' -60.3 NC_001650.1 + 59451 0.67 0.724032
Target:  5'- aGACgGCCCCCcGcGCCCGuCC-CCGc -3'
miRNA:   3'- cCUGaUGGGGGuCuCGGGCuGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 54265 0.67 0.724032
Target:  5'- cGGGC-GCCUCCAGGggcguGCCCG-CCACa- -3'
miRNA:   3'- -CCUGaUGGGGGUCU-----CGGGCuGGUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.