Results 101 - 120 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 59451 | 0.67 | 0.724032 |
Target: 5'- aGACgGCCCCCcGcGCCCGuCC-CCGc -3' miRNA: 3'- cCUGaUGGGGGuCuCGGGCuGGuGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 115190 | 0.67 | 0.732447 |
Target: 5'- aGGACgucggACCUCacaaAGucaggccugcacaGGCCCGGCCGCUGc -3' miRNA: 3'- -CCUGa----UGGGGg---UC-------------UCGGGCUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 142771 | 0.67 | 0.733379 |
Target: 5'- aGGGCguuUCCCCAGGGC--GGCgGCCGg -3' miRNA: 3'- -CCUGau-GGGGGUCUCGggCUGgUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 76993 | 0.67 | 0.733379 |
Target: 5'- cGGACUACCUUCAGAGaUuuGACUcggucaggguGCCc -3' miRNA: 3'- -CCUGAUGGGGGUCUC-GggCUGG----------UGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 88727 | 0.67 | 0.739875 |
Target: 5'- gGGGCUccucggggaaGCCCCCGGccggcaagcggggcAGgCCGACgCGCCu -3' miRNA: 3'- -CCUGA----------UGGGGGUC--------------UCgGGCUG-GUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 113582 | 0.67 | 0.741724 |
Target: 5'- aGGugUGCuCCaCCAGgugGGCCUugaacauGGCCACCa -3' miRNA: 3'- -CCugAUG-GG-GGUC---UCGGG-------CUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 24530 | 0.67 | 0.742647 |
Target: 5'- cGGCUGCCCCUAcccCCUGGCCGCg- -3' miRNA: 3'- cCUGAUGGGGGUcucGGGCUGGUGgc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 73472 | 0.67 | 0.742647 |
Target: 5'- cGGGCUucgccugccacgGCCCCCcGGGCCUcaGCCACgGc -3' miRNA: 3'- -CCUGA------------UGGGGGuCUCGGGc-UGGUGgC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 124468 | 0.67 | 0.742647 |
Target: 5'- gGGGCgccucGCCCCCGGGGgCCacgGGCC-CCu -3' miRNA: 3'- -CCUGa----UGGGGGUCUCgGG---CUGGuGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 162403 | 0.67 | 0.742647 |
Target: 5'- gGGGgUGgucgccucccccUCCCCGGGGCCuCGGCCGgCGc -3' miRNA: 3'- -CCUgAU------------GGGGGUCUCGG-GCUGGUgGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 136726 | 0.67 | 0.742647 |
Target: 5'- ----aACCCCCaccgugucAGAGacCCCGGCCACUGa -3' miRNA: 3'- ccugaUGGGGG--------UCUC--GGGCUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 62880 | 0.67 | 0.742647 |
Target: 5'- gGGGCUccggaGCaCCCgGGGGCgCGACCcCCa -3' miRNA: 3'- -CCUGA-----UG-GGGgUCUCGgGCUGGuGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 171432 | 0.67 | 0.749083 |
Target: 5'- gGGGCUccggagGCCCUCcGuGCCCGGCUcggggaagaccuagGCCGg -3' miRNA: 3'- -CCUGA------UGGGGGuCuCGGGCUGG--------------UGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 4725 | 0.67 | 0.749083 |
Target: 5'- gGGGCUccggagGCCCUCcGuGCCCGGCUcggggaagaccuagGCCGg -3' miRNA: 3'- -CCUGA------UGGGGGuCuCGGGCUGG--------------UGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 41730 | 0.67 | 0.751827 |
Target: 5'- uGGACcaccacACCCaCCAGAGgucUCCGGCgGCCa -3' miRNA: 3'- -CCUGa-----UGGG-GGUCUC---GGGCUGgUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 164870 | 0.67 | 0.751827 |
Target: 5'- aGGAUgggagGCCCugaCUAGAGCgCG-CCGCCGc -3' miRNA: 3'- -CCUGa----UGGG---GGUCUCGgGCuGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 111489 | 0.67 | 0.751827 |
Target: 5'- aGGCcACCCCCGGGcuggugaucCCCG-CCGCCGc -3' miRNA: 3'- cCUGaUGGGGGUCUc--------GGGCuGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 126326 | 0.67 | 0.751827 |
Target: 5'- cGGGCUACUauCCCGc-GCCCuACCACCc -3' miRNA: 3'- -CCUGAUGG--GGGUcuCGGGcUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 54333 | 0.67 | 0.760009 |
Target: 5'- uGGCUcauuuuaGCCUCCAcGGCCuCGGCCuGCCGg -3' miRNA: 3'- cCUGA-------UGGGGGUcUCGG-GCUGG-UGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 131748 | 0.67 | 0.760913 |
Target: 5'- aGGACauguacuuCCCCCGGAgcagGCCCGAgguggaCCACUu -3' miRNA: 3'- -CCUGau------GGGGGUCU----CGGGCU------GGUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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