miRNA display CGI


Results 21 - 40 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 133306 0.66 0.812997
Target:  5'- gGGGCUGCCCaggaggcgCCGGGcgaggggacGCCCGAgCCAgCa -3'
miRNA:   3'- -CCUGAUGGG--------GGUCU---------CGGGCU-GGUgGc -5'
4007 5' -60.3 NC_001650.1 + 131565 0.66 0.812997
Target:  5'- gGGGCggagaaACCCCgAGGccgagguccuGCCCGugacCCACCGc -3'
miRNA:   3'- -CCUGa-----UGGGGgUCU----------CGGGCu---GGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 145936 0.66 0.812997
Target:  5'- cGGGCU-CCCUguGccccAGCCCGGCC-CgGg -3'
miRNA:   3'- -CCUGAuGGGGguC----UCGGGCUGGuGgC- -5'
4007 5' -60.3 NC_001650.1 + 161163 0.66 0.812997
Target:  5'- aGACcucaacACCCCCGGGaccaaguaacuuGCCagaGACCACUGa -3'
miRNA:   3'- cCUGa-----UGGGGGUCU------------CGGg--CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 164426 0.66 0.812997
Target:  5'- gGGGCgUGCUCuaCCAGAGaccCCCGGCuCACCc -3'
miRNA:   3'- -CCUG-AUGGG--GGUCUC---GGGCUG-GUGGc -5'
4007 5' -60.3 NC_001650.1 + 7395 0.66 0.812997
Target:  5'- gGGACaGCCCCCAuuGGGCCacgGGCUuuauuGCCc -3'
miRNA:   3'- -CCUGaUGGGGGU--CUCGGg--CUGG-----UGGc -5'
4007 5' -60.3 NC_001650.1 + 94093 0.66 0.812997
Target:  5'- -aACUACUCCCAGuucauagaccaGGaCCUGuCCGCCGu -3'
miRNA:   3'- ccUGAUGGGGGUC-----------UC-GGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 7939 0.66 0.806326
Target:  5'- uGGACaucccccauuggGCCCCCguguguaaucaccacGGGGCCCGugCAUa- -3'
miRNA:   3'- -CCUGa-----------UGGGGG---------------UCUCGGGCugGUGgc -5'
4007 5' -60.3 NC_001650.1 + 115658 0.66 0.804644
Target:  5'- -uGCgACCCCCGcGGcGCCCG-CUACCGc -3'
miRNA:   3'- ccUGaUGGGGGU-CU-CGGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 67112 0.66 0.804644
Target:  5'- -aGCUGCCCCCGcc-CCUGGCCGCg- -3'
miRNA:   3'- ccUGAUGGGGGUcucGGGCUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 77354 0.66 0.804644
Target:  5'- aGACcugucauCCaCCCcGGGCCCGACC-CCa -3'
miRNA:   3'- cCUGau-----GG-GGGuCUCGGGCUGGuGGc -5'
4007 5' -60.3 NC_001650.1 + 27883 0.66 0.804644
Target:  5'- uGGGCUgaggcACCCCCu--GCCCcccgucgaGGCCcACCGg -3'
miRNA:   3'- -CCUGA-----UGGGGGucuCGGG--------CUGG-UGGC- -5'
4007 5' -60.3 NC_001650.1 + 50653 0.66 0.804644
Target:  5'- gGGGCcggUGCCCgCggGGGGCCUGACCuucuACCu -3'
miRNA:   3'- -CCUG---AUGGGgG--UCUCGGGCUGG----UGGc -5'
4007 5' -60.3 NC_001650.1 + 127137 0.66 0.804644
Target:  5'- aGACcaccgGgCCCCGGAGCCUGcgaACC-CCGu -3'
miRNA:   3'- cCUGa----UgGGGGUCUCGGGC---UGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 58093 0.66 0.79615
Target:  5'- -aGCcGCCCgCCGGGGCCUgGGCCGCg- -3'
miRNA:   3'- ccUGaUGGG-GGUCUCGGG-CUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 127311 0.66 0.79615
Target:  5'- cGACUACCacgcccaCCAGAGCaaauCCGCCa -3'
miRNA:   3'- cCUGAUGGg------GGUCUCGggcuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 135284 0.66 0.79615
Target:  5'- cGGGCa--CCUCAGAGgUguUGACCACCGu -3'
miRNA:   3'- -CCUGaugGGGGUCUCgG--GCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 32478 0.66 0.79615
Target:  5'- aGGACcaggaCCC-GAGCCCGACCcuCCa -3'
miRNA:   3'- -CCUGaugg-GGGuCUCGGGCUGGu-GGc -5'
4007 5' -60.3 NC_001650.1 + 28130 0.66 0.79615
Target:  5'- uGGGCaACCUggCCGGGGUCCucgaGGCCugCGa -3'
miRNA:   3'- -CCUGaUGGG--GGUCUCGGG----CUGGugGC- -5'
4007 5' -60.3 NC_001650.1 + 74523 0.66 0.79615
Target:  5'- ---gUGCCCCCgguguuuggcagGGAGgCCG-CCACCGu -3'
miRNA:   3'- ccugAUGGGGG------------UCUCgGGCuGGUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.