miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 163475 0.66 0.795293
Target:  5'- aGGGCUcCCCCCAGA-CCCacaagaaguggauGACCcuaGCCu -3'
miRNA:   3'- -CCUGAuGGGGGUCUcGGG-------------CUGG---UGGc -5'
4007 5' -60.3 NC_001650.1 + 125384 0.66 0.787522
Target:  5'- gGGGCUcaucugccuCUCCCGG-GCCCGAUC-CCa -3'
miRNA:   3'- -CCUGAu--------GGGGGUCuCGGGCUGGuGGc -5'
4007 5' -60.3 NC_001650.1 + 87631 0.66 0.787522
Target:  5'- -aGCUGCCUCUcaaauGAGCuuGACCAUUGu -3'
miRNA:   3'- ccUGAUGGGGGu----CUCGggCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 159645 0.66 0.787522
Target:  5'- gGGAC-ACCgCCAGGGCgUCGaACC-CCGa -3'
miRNA:   3'- -CCUGaUGGgGGUCUCG-GGC-UGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 21637 0.66 0.787522
Target:  5'- -aGCUGCCCgCGGGGCugggguccuacCUGACCAgCGg -3'
miRNA:   3'- ccUGAUGGGgGUCUCG-----------GGCUGGUgGC- -5'
4007 5' -60.3 NC_001650.1 + 102344 0.66 0.787522
Target:  5'- gGGACcACUCCCAGAuaCCGGUCAUCu -3'
miRNA:   3'- -CCUGaUGGGGGUCUcgGGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 45225 0.66 0.787522
Target:  5'- cGGGCUcACCCCCAaAGCCaggcGCC-CCa -3'
miRNA:   3'- -CCUGA-UGGGGGUcUCGGgc--UGGuGGc -5'
4007 5' -60.3 NC_001650.1 + 52353 0.66 0.784035
Target:  5'- gGGGCgcgaacccgucugACCCCCAcagggcuuGGGUgacgucggcggCCGGCCACCGc -3'
miRNA:   3'- -CCUGa------------UGGGGGU--------CUCG-----------GGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 24166 0.66 0.778768
Target:  5'- uGACguccgagACCCCCGGGGUCgCGcuggagguGCCGCUGu -3'
miRNA:   3'- cCUGa------UGGGGGUCUCGG-GC--------UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 120933 0.66 0.778768
Target:  5'- -cGCUGgCCa-AGAGCCUgcuGACCACCGa -3'
miRNA:   3'- ccUGAUgGGggUCUCGGG---CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 54897 0.66 0.778768
Target:  5'- gGGAUUcugaGCCCCCGGcucgcGGCCUcgcucgGGCgGCCGg -3'
miRNA:   3'- -CCUGA----UGGGGGUC-----UCGGG------CUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 62616 0.66 0.778768
Target:  5'- uGGACggGCCaCCCgAGGGCgCUGcccuCCGCCGc -3'
miRNA:   3'- -CCUGa-UGG-GGG-UCUCG-GGCu---GGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 25845 0.66 0.777886
Target:  5'- gGGAgaggUACCCgCCAccgcgcuGAcCCCGGCCGCCGa -3'
miRNA:   3'- -CCUg---AUGGG-GGU-------CUcGGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 91280 0.66 0.773458
Target:  5'- gGGACggucuuugccgccaGCCCCCGGAuCCUGcCCACUa -3'
miRNA:   3'- -CCUGa-------------UGGGGGUCUcGGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 174918 0.66 0.769896
Target:  5'- aGGACUGgCCUa--GGCCCu-CCACCGg -3'
miRNA:   3'- -CCUGAUgGGGgucUCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 1074 0.66 0.769896
Target:  5'- uGGGCccACCCCCGG-GCCC--CCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGUCuCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 167781 0.66 0.769896
Target:  5'- uGGGCccACCCCCGG-GCCC--CCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGUCuCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 103959 0.66 0.769896
Target:  5'- gGGACgcacGCCUCCAGcagcAGCCCGuuCACg- -3'
miRNA:   3'- -CCUGa---UGGGGGUC----UCGGGCugGUGgc -5'
4007 5' -60.3 NC_001650.1 + 14454 0.66 0.769896
Target:  5'- gGGAg-GCCUCCGG-GCCCGGCgACg- -3'
miRNA:   3'- -CCUgaUGGGGGUCuCGGGCUGgUGgc -5'
4007 5' -60.3 NC_001650.1 + 181161 0.66 0.769896
Target:  5'- gGGAg-GCCUCCGG-GCCCGGCgACg- -3'
miRNA:   3'- -CCUgaUGGGGGUCuCGGGCUGgUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.