miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 93396 0.66 0.769896
Target:  5'- uGGGC-ACCCCCA---CCCugugGACCACCa -3'
miRNA:   3'- -CCUGaUGGGGGUcucGGG----CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 181161 0.66 0.769896
Target:  5'- gGGAg-GCCUCCGG-GCCCGGCgACg- -3'
miRNA:   3'- -CCUgaUGGGGGUCuCGGGCUGgUGgc -5'
4007 5' -60.3 NC_001650.1 + 103959 0.66 0.769896
Target:  5'- gGGACgcacGCCUCCAGcagcAGCCCGuuCACg- -3'
miRNA:   3'- -CCUGa---UGGGGGUC----UCGGGCugGUGgc -5'
4007 5' -60.3 NC_001650.1 + 14454 0.66 0.769896
Target:  5'- gGGAg-GCCUCCGG-GCCCGGCgACg- -3'
miRNA:   3'- -CCUgaUGGGGGUCuCGGGCUGgUGgc -5'
4007 5' -60.3 NC_001650.1 + 43000 0.66 0.769002
Target:  5'- cGGGCUcccgaugcGCCCgaucucaucccuuCCAGGGUCCGGCgGgCCGg -3'
miRNA:   3'- -CCUGA--------UGGG-------------GGUCUCGGGCUGgU-GGC- -5'
4007 5' -60.3 NC_001650.1 + 131810 0.66 0.769002
Target:  5'- aGGGCcuuCCUguucaggCCGGGGCgguggCCGGCCGCCGa -3'
miRNA:   3'- -CCUGau-GGG-------GGUCUCG-----GGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 125248 0.67 0.760913
Target:  5'- -uGCUcCUCCCGG-GCCCGugccagaaGCCGCCGc -3'
miRNA:   3'- ccUGAuGGGGGUCuCGGGC--------UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 166147 0.67 0.760913
Target:  5'- ----aGCCCCCAGAGugacaCCCGcCCACUc -3'
miRNA:   3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 132234 0.67 0.760913
Target:  5'- gGGAaugUACCCCCAacGCCUuuACCGCCGc -3'
miRNA:   3'- -CCUg--AUGGGGGUcuCGGGc-UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 131748 0.67 0.760913
Target:  5'- aGGACauguacuuCCCCCGGAgcagGCCCGAgguggaCCACUu -3'
miRNA:   3'- -CCUGau------GGGGGUCU----CGGGCU------GGUGGc -5'
4007 5' -60.3 NC_001650.1 + 105104 0.67 0.760913
Target:  5'- gGGACUGgCCCUccu-CCCGcCCGCCGa -3'
miRNA:   3'- -CCUGAUgGGGGucucGGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 54333 0.67 0.760009
Target:  5'- uGGCUcauuuuaGCCUCCAcGGCCuCGGCCuGCCGg -3'
miRNA:   3'- cCUGA-------UGGGGGUcUCGG-GCUGG-UGGC- -5'
4007 5' -60.3 NC_001650.1 + 126326 0.67 0.751827
Target:  5'- cGGGCUACUauCCCGc-GCCCuACCACCc -3'
miRNA:   3'- -CCUGAUGG--GGGUcuCGGGcUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 111489 0.67 0.751827
Target:  5'- aGGCcACCCCCGGGcuggugaucCCCG-CCGCCGc -3'
miRNA:   3'- cCUGaUGGGGGUCUc--------GGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 41730 0.67 0.751827
Target:  5'- uGGACcaccacACCCaCCAGAGgucUCCGGCgGCCa -3'
miRNA:   3'- -CCUGa-----UGGG-GGUCUC---GGGCUGgUGGc -5'
4007 5' -60.3 NC_001650.1 + 164870 0.67 0.751827
Target:  5'- aGGAUgggagGCCCugaCUAGAGCgCG-CCGCCGc -3'
miRNA:   3'- -CCUGa----UGGG---GGUCUCGgGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 4725 0.67 0.749083
Target:  5'- gGGGCUccggagGCCCUCcGuGCCCGGCUcggggaagaccuagGCCGg -3'
miRNA:   3'- -CCUGA------UGGGGGuCuCGGGCUGG--------------UGGC- -5'
4007 5' -60.3 NC_001650.1 + 171432 0.67 0.749083
Target:  5'- gGGGCUccggagGCCCUCcGuGCCCGGCUcggggaagaccuagGCCGg -3'
miRNA:   3'- -CCUGA------UGGGGGuCuCGGGCUGG--------------UGGC- -5'
4007 5' -60.3 NC_001650.1 + 73472 0.67 0.742647
Target:  5'- cGGGCUucgccugccacgGCCCCCcGGGCCUcaGCCACgGc -3'
miRNA:   3'- -CCUGA------------UGGGGGuCUCGGGc-UGGUGgC- -5'
4007 5' -60.3 NC_001650.1 + 62880 0.67 0.742647
Target:  5'- gGGGCUccggaGCaCCCgGGGGCgCGACCcCCa -3'
miRNA:   3'- -CCUGA-----UG-GGGgUCUCGgGCUGGuGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.