miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 136726 0.67 0.742647
Target:  5'- ----aACCCCCaccgugucAGAGacCCCGGCCACUGa -3'
miRNA:   3'- ccugaUGGGGG--------UCUC--GGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 73472 0.67 0.742647
Target:  5'- cGGGCUucgccugccacgGCCCCCcGGGCCUcaGCCACgGc -3'
miRNA:   3'- -CCUGA------------UGGGGGuCUCGGGc-UGGUGgC- -5'
4007 5' -60.3 NC_001650.1 + 62880 0.67 0.742647
Target:  5'- gGGGCUccggaGCaCCCgGGGGCgCGACCcCCa -3'
miRNA:   3'- -CCUGA-----UG-GGGgUCUCGgGCUGGuGGc -5'
4007 5' -60.3 NC_001650.1 + 24530 0.67 0.742647
Target:  5'- cGGCUGCCCCUAcccCCUGGCCGCg- -3'
miRNA:   3'- cCUGAUGGGGGUcucGGGCUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 113582 0.67 0.741724
Target:  5'- aGGugUGCuCCaCCAGgugGGCCUugaacauGGCCACCa -3'
miRNA:   3'- -CCugAUG-GG-GGUC---UCGGG-------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 88727 0.67 0.739875
Target:  5'- gGGGCUccucggggaaGCCCCCGGccggcaagcggggcAGgCCGACgCGCCu -3'
miRNA:   3'- -CCUGA----------UGGGGGUC--------------UCgGGCUG-GUGGc -5'
4007 5' -60.3 NC_001650.1 + 76993 0.67 0.733379
Target:  5'- cGGACUACCUUCAGAGaUuuGACUcggucaggguGCCc -3'
miRNA:   3'- -CCUGAUGGGGGUCUC-GggCUGG----------UGGc -5'
4007 5' -60.3 NC_001650.1 + 142771 0.67 0.733379
Target:  5'- aGGGCguuUCCCCAGGGC--GGCgGCCGg -3'
miRNA:   3'- -CCUGau-GGGGGUCUCGggCUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 115190 0.67 0.732447
Target:  5'- aGGACgucggACCUCacaaAGucaggccugcacaGGCCCGGCCGCUGc -3'
miRNA:   3'- -CCUGa----UGGGGg---UC-------------UCGGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 54265 0.67 0.724032
Target:  5'- cGGGC-GCCUCCAGGggcguGCCCG-CCACa- -3'
miRNA:   3'- -CCUGaUGGGGGUCU-----CGGGCuGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 59017 0.67 0.724032
Target:  5'- gGGGCcccgucGCCUCCGGGGCgggaucuuCUGGCCGCCu -3'
miRNA:   3'- -CCUGa-----UGGGGGUCUCG--------GGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 5829 0.67 0.724032
Target:  5'- uGGGCagGCCCCCuaGGCCCccauugGGCCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGucUCGGG------CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 172536 0.67 0.724032
Target:  5'- uGGGCagGCCCCCuaGGCCCccauugGGCCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGucUCGGG------CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 59451 0.67 0.724032
Target:  5'- aGACgGCCCCCcGcGCCCGuCC-CCGc -3'
miRNA:   3'- cCUGaUGGGGGuCuCGGGCuGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 155678 0.67 0.724032
Target:  5'- gGGACgagGCCggucCUCGGGGCCC-ACCACgGa -3'
miRNA:   3'- -CCUGa--UGG----GGGUCUCGGGcUGGUGgC- -5'
4007 5' -60.3 NC_001650.1 + 69777 0.67 0.721214
Target:  5'- aGGAa-ACCCCCaagcAGaAGCCCGccaaggcaaagcccGCCGCCGc -3'
miRNA:   3'- -CCUgaUGGGGG----UC-UCGGGC--------------UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 82500 0.67 0.714614
Target:  5'- cGACgACCCCgAGuGCCUGuACCGCgCGc -3'
miRNA:   3'- cCUGaUGGGGgUCuCGGGC-UGGUG-GC- -5'
4007 5' -60.3 NC_001650.1 + 76953 0.67 0.714614
Target:  5'- aGACcaccGCCCCCAu-GCCCGugC-CCGa -3'
miRNA:   3'- cCUGa---UGGGGGUcuCGGGCugGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 147544 0.67 0.714614
Target:  5'- aGGAUguaGCCCUCcc-GCCCGGCCACg- -3'
miRNA:   3'- -CCUGa--UGGGGGucuCGGGCUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 13905 0.67 0.713669
Target:  5'- aGGCUuCCCCCGGAgagaggcGCCCcccugGACCcCCGg -3'
miRNA:   3'- cCUGAuGGGGGUCU-------CGGG-----CUGGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.