Results 101 - 120 of 190 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 51796 | 0.68 | 0.708932 |
Target: 5'- cGGcCUGCCUCCcgaAGAccuccaccuccucgcGCCCGGCCagGCCGu -3' miRNA: 3'- -CCuGAUGGGGG---UCU---------------CGGGCUGG--UGGC- -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 31975 | 0.68 | 0.705132 |
Target: 5'- gGGAgCUGCCUCgCGGAGUCCG-CCuCUGg -3' miRNA: 3'- -CCU-GAUGGGG-GUCUCGGGCuGGuGGC- -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 136065 | 0.68 | 0.705132 |
Target: 5'- -uACU-CCCCCAGccCCgCGGCCGCCa -3' miRNA: 3'- ccUGAuGGGGGUCucGG-GCUGGUGGc -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 107181 | 0.68 | 0.705132 |
Target: 5'- cGGGCU-CCCCCGaGGCCCagcGCgGCCu -3' miRNA: 3'- -CCUGAuGGGGGUcUCGGGc--UGgUGGc -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 106258 | 0.68 | 0.705132 |
Target: 5'- uGGGCgcgacgGCCCCuCGGuGCCuCGcaGCCGCCc -3' miRNA: 3'- -CCUGa-----UGGGG-GUCuCGG-GC--UGGUGGc -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 109165 | 0.68 | 0.704181 |
Target: 5'- cGGcCUGCCCCC--GGCCCGAgUgggacgaGCCGu -3' miRNA: 3'- -CCuGAUGGGGGucUCGGGCUgG-------UGGC- -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 134100 | 0.68 | 0.702277 |
Target: 5'- aGGCcaUGCCCgCAGAuagagagaucaaucGCCCGcACCACCa -3' miRNA: 3'- cCUG--AUGGGgGUCU--------------CGGGC-UGGUGGc -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 56162 | 0.68 | 0.695595 |
Target: 5'- ----aGCCCCUcGGGUCCG-CCACCGu -3' miRNA: 3'- ccugaUGGGGGuCUCGGGCuGGUGGC- -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 109487 | 0.68 | 0.695595 |
Target: 5'- cGugUGCCaCCCGGGGUCgccggacaaGGCCGCCu -3' miRNA: 3'- cCugAUGG-GGGUCUCGGg--------CUGGUGGc -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 161538 | 0.68 | 0.695595 |
Target: 5'- uGGACgGCCgCCAGgauggaGGCCa-GCCGCCGg -3' miRNA: 3'- -CCUGaUGGgGGUC------UCGGgcUGGUGGC- -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 127399 | 0.68 | 0.695595 |
Target: 5'- aGGA--GCCCCgAGAGCCCGG--ACCu -3' miRNA: 3'- -CCUgaUGGGGgUCUCGGGCUggUGGc -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 134698 | 0.68 | 0.695595 |
Target: 5'- aGGCUGacCCCCCGGAuGCCCcagaGGCgGCUGa -3' miRNA: 3'- cCUGAU--GGGGGUCU-CGGG----CUGgUGGC- -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 131427 | 0.68 | 0.695595 |
Target: 5'- --cCUGCgCCCGG-GCCCcgagGGCCGCCGc -3' miRNA: 3'- ccuGAUGgGGGUCuCGGG----CUGGUGGC- -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 58579 | 0.68 | 0.68601 |
Target: 5'- aGAaucGCCCUCGGGGCCCGccucgaucGCCAUCa -3' miRNA: 3'- cCUga-UGGGGGUCUCGGGC--------UGGUGGc -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 50342 | 0.68 | 0.68601 |
Target: 5'- gGGGCgGCCUCUAGAGgC-GACCGCUGc -3' miRNA: 3'- -CCUGaUGGGGGUCUCgGgCUGGUGGC- -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 27707 | 0.68 | 0.68601 |
Target: 5'- -cACUcGCCCCCcGGGCCUGACUcCCu -3' miRNA: 3'- ccUGA-UGGGGGuCUCGGGCUGGuGGc -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 112632 | 0.68 | 0.68505 |
Target: 5'- gGGGgUggACCUCCaguuugaGGAGCUCGugCGCCGa -3' miRNA: 3'- -CCUgA--UGGGGG-------UCUCGGGCugGUGGC- -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 126667 | 0.68 | 0.676386 |
Target: 5'- cGGGCU-CCCaCCGGAcgaaaaguggcuGCCCauGACUGCCGa -3' miRNA: 3'- -CCUGAuGGG-GGUCU------------CGGG--CUGGUGGC- -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 126470 | 0.68 | 0.676386 |
Target: 5'- cGGGCUAcuCCCCCGucGCCC-ACC-CCGc -3' miRNA: 3'- -CCUGAU--GGGGGUcuCGGGcUGGuGGC- -5' |
|||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 55079 | 0.68 | 0.676386 |
Target: 5'- aGGGCcGCCCCCGuGucCUCGGCC-CCGg -3' miRNA: 3'- -CCUGaUGGGGGU-CucGGGCUGGuGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home