Results 121 - 140 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 126667 | 0.68 | 0.676386 |
Target: 5'- cGGGCU-CCCaCCGGAcgaaaaguggcuGCCCauGACUGCCGa -3' miRNA: 3'- -CCUGAuGGG-GGUCU------------CGGG--CUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 145649 | 0.68 | 0.676386 |
Target: 5'- aGGGC-ACCCCCAGccccauguccCCCGAgCGCUGg -3' miRNA: 3'- -CCUGaUGGGGGUCuc--------GGGCUgGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 180612 | 0.68 | 0.675421 |
Target: 5'- aGGCUuCCCCCGGAgagaggcGCCCccugGACCcCCGg -3' miRNA: 3'- cCUGAuGGGGGUCU-------CGGG----CUGGuGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 125051 | 0.68 | 0.666728 |
Target: 5'- cGGGCgggGCgCCUc--GCCCGGCCAUCGg -3' miRNA: 3'- -CCUGa--UGgGGGucuCGGGCUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 45345 | 0.68 | 0.657045 |
Target: 5'- -aGCUcGCCCCCGGAGCUCGGuucccaaacCCAacCCGg -3' miRNA: 3'- ccUGA-UGGGGGUCUCGGGCU---------GGU--GGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 36544 | 0.68 | 0.657045 |
Target: 5'- aGGuac-CCCCCAGAGCggcucCCGGCCGCg- -3' miRNA: 3'- -CCugauGGGGGUCUCG-----GGCUGGUGgc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 57210 | 0.68 | 0.657045 |
Target: 5'- -cACUGCCCCCcGGGCucCCGACcCGCgGa -3' miRNA: 3'- ccUGAUGGGGGuCUCG--GGCUG-GUGgC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 174646 | 0.68 | 0.657045 |
Target: 5'- uGGACU-CCCCCAuuGGGCCCccguguguaAUCACCa -3' miRNA: 3'- -CCUGAuGGGGGU--CUCGGGc--------UGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 178564 | 0.68 | 0.654136 |
Target: 5'- gGGGCUACCCaCUA-AGCCCcgggggucuaagggGGCCGCCc -3' miRNA: 3'- -CCUGAUGGG-GGUcUCGGG--------------CUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 11857 | 0.68 | 0.654136 |
Target: 5'- gGGGCUACCCaCUA-AGCCCcgggggucuaagggGGCCGCCc -3' miRNA: 3'- -CCUGAUGGG-GGUcUCGGG--------------CUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 12470 | 0.69 | 0.647344 |
Target: 5'- ----cACCCCCGGAGggaccCCCGuCCGCCu -3' miRNA: 3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 179177 | 0.69 | 0.647344 |
Target: 5'- ----cACCCCCGGAGggaccCCCGuCCGCCu -3' miRNA: 3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 112584 | 0.69 | 0.637632 |
Target: 5'- aGGCcacACCCCUGGcGCCCGGCgCGCCc -3' miRNA: 3'- cCUGa--UGGGGGUCuCGGGCUG-GUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 109378 | 0.69 | 0.637632 |
Target: 5'- cGGACggGCCCCUGGAcaCCGgcaucuACCACCGg -3' miRNA: 3'- -CCUGa-UGGGGGUCUcgGGC------UGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 114263 | 0.69 | 0.627916 |
Target: 5'- aGGCcGCCCCCAGcaucccGGuCCCGaagGCCGCCa -3' miRNA: 3'- cCUGaUGGGGGUC------UC-GGGC---UGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 66313 | 0.69 | 0.618203 |
Target: 5'- gGGAC-GCCCCCAaagaucAGCUCGgucACCGCCGc -3' miRNA: 3'- -CCUGaUGGGGGUc-----UCGGGC---UGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 154454 | 0.69 | 0.6085 |
Target: 5'- cGGACgaggACCCagaguaCUGGGGCgCGGCCGCCu -3' miRNA: 3'- -CCUGa---UGGG------GGUCUCGgGCUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 95498 | 0.69 | 0.598813 |
Target: 5'- gGGGCUuCCCCgaGGAGCCCccucCCGCCc -3' miRNA: 3'- -CCUGAuGGGGg-UCUCGGGcu--GGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 114507 | 0.69 | 0.598813 |
Target: 5'- aGACUGCuCCUCGGGGCCUGcugguACC-CCGu -3' miRNA: 3'- cCUGAUG-GGGGUCUCGGGC-----UGGuGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 117013 | 0.7 | 0.589148 |
Target: 5'- aGGACUGgCUCUgguccacaaacGGGGaCCUGGCCGCCGc -3' miRNA: 3'- -CCUGAUgGGGG-----------UCUC-GGGCUGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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