miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 611 0.66 0.769896
Target:  5'- cGGGCUGCCgCCCucccccGGGCCC--CCAUUGg -3'
miRNA:   3'- -CCUGAUGG-GGGu-----CUCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 1074 0.66 0.769896
Target:  5'- uGGGCccACCCCCGG-GCCC--CCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGUCuCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 4725 0.67 0.749083
Target:  5'- gGGGCUccggagGCCCUCcGuGCCCGGCUcggggaagaccuagGCCGg -3'
miRNA:   3'- -CCUGA------UGGGGGuCuCGGGCUGG--------------UGGC- -5'
4007 5' -60.3 NC_001650.1 + 5829 0.67 0.724032
Target:  5'- uGGGCagGCCCCCuaGGCCCccauugGGCCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGucUCGGG------CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 7049 0.66 0.812997
Target:  5'- uGGACaGCCCCCAuuGGGCCaugGGCUuuauuGCCc -3'
miRNA:   3'- -CCUGaUGGGGGU--CUCGGg--CUGG-----UGGc -5'
4007 5' -60.3 NC_001650.1 + 7395 0.66 0.812997
Target:  5'- gGGACaGCCCCCAuuGGGCCacgGGCUuuauuGCCc -3'
miRNA:   3'- -CCUGaUGGGGGU--CUCGGg--CUGG-----UGGc -5'
4007 5' -60.3 NC_001650.1 + 7939 0.66 0.806326
Target:  5'- uGGACaucccccauuggGCCCCCguguguaaucaccacGGGGCCCGugCAUa- -3'
miRNA:   3'- -CCUGa-----------UGGGGG---------------UCUCGGGCugGUGgc -5'
4007 5' -60.3 NC_001650.1 + 8211 0.66 0.769896
Target:  5'- aGGACUGgCCUa--GGCCCu-CCACCGg -3'
miRNA:   3'- -CCUGAUgGGGgucUCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 8331 0.66 0.821203
Target:  5'- ----cACCCCCAuAGCCCccACCACCc -3'
miRNA:   3'- ccugaUGGGGGUcUCGGGc-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 11857 0.68 0.654136
Target:  5'- gGGGCUACCCaCUA-AGCCCcgggggucuaagggGGCCGCCc -3'
miRNA:   3'- -CCUGAUGGG-GGUcUCGGG--------------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 12470 0.69 0.647344
Target:  5'- ----cACCCCCGGAGggaccCCCGuCCGCCu -3'
miRNA:   3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 12507 0.71 0.504077
Target:  5'- cGGAggcCCCCCGGAGCCCacCCACUa -3'
miRNA:   3'- -CCUgauGGGGGUCUCGGGcuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 12724 0.7 0.568949
Target:  5'- aGGcCUACCCCUcGAGCCCcGGCCuggauuugcagagGCCu -3'
miRNA:   3'- -CCuGAUGGGGGuCUCGGG-CUGG-------------UGGc -5'
4007 5' -60.3 NC_001650.1 + 12794 0.72 0.441754
Target:  5'- cGGAggGCCUCCGGAGCCCcAUgGCUGg -3'
miRNA:   3'- -CCUgaUGGGGGUCUCGGGcUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 13905 0.67 0.713669
Target:  5'- aGGCUuCCCCCGGAgagaggcGCCCcccugGACCcCCGg -3'
miRNA:   3'- cCUGAuGGGGGUCU-------CGGG-----CUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 14454 0.66 0.769896
Target:  5'- gGGAg-GCCUCCGG-GCCCGGCgACg- -3'
miRNA:   3'- -CCUgaUGGGGGUCuCGGGCUGgUGgc -5'
4007 5' -60.3 NC_001650.1 + 19396 0.66 0.821203
Target:  5'- gGGACguuUGCCgCgGGGGUCugcucgCGGCCGCCGg -3'
miRNA:   3'- -CCUG---AUGGgGgUCUCGG------GCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 21525 0.66 0.821203
Target:  5'- gGGGCUACUgCUgggAGGGCCgCGGCUGCgGu -3'
miRNA:   3'- -CCUGAUGGgGG---UCUCGG-GCUGGUGgC- -5'
4007 5' -60.3 NC_001650.1 + 21637 0.66 0.787522
Target:  5'- -aGCUGCCCgCGGGGCugggguccuacCUGACCAgCGg -3'
miRNA:   3'- ccUGAUGGGgGUCUCG-----------GGCUGGUgGC- -5'
4007 5' -60.3 NC_001650.1 + 24166 0.66 0.778768
Target:  5'- uGACguccgagACCCCCGGGGUCgCGcuggagguGCCGCUGu -3'
miRNA:   3'- cCUGa------UGGGGGUCUCGG-GC--------UGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.