miRNA display CGI


Results 41 - 60 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 45345 0.68 0.657045
Target:  5'- -aGCUcGCCCCCGGAGCUCGGuucccaaacCCAacCCGg -3'
miRNA:   3'- ccUGA-UGGGGGUCUCGGGCU---------GGU--GGC- -5'
4007 5' -60.3 NC_001650.1 + 46591 0.73 0.407336
Target:  5'- -uGCUGCCCCCAGAuauaaagaucaucGCCCccACCACCu -3'
miRNA:   3'- ccUGAUGGGGGUCU-------------CGGGc-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 47996 0.71 0.494928
Target:  5'- aGGACUACgCCCCGGGGCCgcucaaGugCAUa- -3'
miRNA:   3'- -CCUGAUG-GGGGUCUCGGg-----CugGUGgc -5'
4007 5' -60.3 NC_001650.1 + 49288 0.7 0.569907
Target:  5'- -aGCUGCCCCCGG-GCCUggagcuGGCCAgCGu -3'
miRNA:   3'- ccUGAUGGGGGUCuCGGG------CUGGUgGC- -5'
4007 5' -60.3 NC_001650.1 + 50342 0.68 0.68601
Target:  5'- gGGGCgGCCUCUAGAGgC-GACCGCUGc -3'
miRNA:   3'- -CCUGaUGGGGGUCUCgGgCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 50653 0.66 0.804644
Target:  5'- gGGGCcggUGCCCgCggGGGGCCUGACCuucuACCu -3'
miRNA:   3'- -CCUG---AUGGGgG--UCUCGGGCUGG----UGGc -5'
4007 5' -60.3 NC_001650.1 + 51796 0.68 0.708932
Target:  5'- cGGcCUGCCUCCcgaAGAccuccaccuccucgcGCCCGGCCagGCCGu -3'
miRNA:   3'- -CCuGAUGGGGG---UCU---------------CGGGCUGG--UGGC- -5'
4007 5' -60.3 NC_001650.1 + 52353 0.66 0.784035
Target:  5'- gGGGCgcgaacccgucugACCCCCAcagggcuuGGGUgacgucggcggCCGGCCACCGc -3'
miRNA:   3'- -CCUGa------------UGGGGGU--------CUCG-----------GGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 52778 0.74 0.345245
Target:  5'- gGGACUcgcggcggcggcgGCCCUCGGGGCCCGGgCGCa- -3'
miRNA:   3'- -CCUGA-------------UGGGGGUCUCGGGCUgGUGgc -5'
4007 5' -60.3 NC_001650.1 + 54265 0.67 0.724032
Target:  5'- cGGGC-GCCUCCAGGggcguGCCCG-CCACa- -3'
miRNA:   3'- -CCUGaUGGGGGUCU-----CGGGCuGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 54333 0.67 0.760009
Target:  5'- uGGCUcauuuuaGCCUCCAcGGCCuCGGCCuGCCGg -3'
miRNA:   3'- cCUGA-------UGGGGGUcUCGG-GCUGG-UGGC- -5'
4007 5' -60.3 NC_001650.1 + 54897 0.66 0.778768
Target:  5'- gGGAUUcugaGCCCCCGGcucgcGGCCUcgcucgGGCgGCCGg -3'
miRNA:   3'- -CCUGA----UGGGGGUC-----UCGGG------CUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 55079 0.68 0.676386
Target:  5'- aGGGCcGCCCCCGuGucCUCGGCC-CCGg -3'
miRNA:   3'- -CCUGaUGGGGGU-CucGGGCUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 55264 0.66 0.812997
Target:  5'- gGGACUcCCCCCgaGGAucuGCUCGAUCuugGCCa -3'
miRNA:   3'- -CCUGAuGGGGG--UCU---CGGGCUGG---UGGc -5'
4007 5' -60.3 NC_001650.1 + 56162 0.68 0.695595
Target:  5'- ----aGCCCCUcGGGUCCG-CCACCGu -3'
miRNA:   3'- ccugaUGGGGGuCUCGGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 57210 0.68 0.657045
Target:  5'- -cACUGCCCCCcGGGCucCCGACcCGCgGa -3'
miRNA:   3'- ccUGAUGGGGGuCUCG--GGCUG-GUGgC- -5'
4007 5' -60.3 NC_001650.1 + 58093 0.66 0.79615
Target:  5'- -aGCcGCCCgCCGGGGCCUgGGCCGCg- -3'
miRNA:   3'- ccUGaUGGG-GGUCUCGGG-CUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 58579 0.68 0.68601
Target:  5'- aGAaucGCCCUCGGGGCCCGccucgaucGCCAUCa -3'
miRNA:   3'- cCUga-UGGGGGUCUCGGGC--------UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 59017 0.67 0.724032
Target:  5'- gGGGCcccgucGCCUCCGGGGCgggaucuuCUGGCCGCCu -3'
miRNA:   3'- -CCUGa-----UGGGGGUCUCG--------GGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 59451 0.67 0.724032
Target:  5'- aGACgGCCCCCcGcGCCCGuCC-CCGc -3'
miRNA:   3'- cCUGaUGGGGGuCuCGGGCuGGuGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.