miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 59746 0.66 0.816298
Target:  5'- gGGGCccgugGCCCCCGGGggcgaggcGCCCcccacggacacgcugGACUACCu -3'
miRNA:   3'- -CCUGa----UGGGGGUCU--------CGGG---------------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 60513 0.66 0.812997
Target:  5'- gGGGCguccACCCCCAGcAGCCCaaaGAucUCAUUGg -3'
miRNA:   3'- -CCUGa---UGGGGGUC-UCGGG---CU--GGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 62616 0.66 0.778768
Target:  5'- uGGACggGCCaCCCgAGGGCgCUGcccuCCGCCGc -3'
miRNA:   3'- -CCUGa-UGG-GGG-UCUCG-GGCu---GGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 62880 0.67 0.742647
Target:  5'- gGGGCUccggaGCaCCCgGGGGCgCGACCcCCa -3'
miRNA:   3'- -CCUGA-----UG-GGGgUCUCGgGCUGGuGGc -5'
4007 5' -60.3 NC_001650.1 + 65109 0.66 0.820389
Target:  5'- aGGGCUucACCUCCAaccaccuGAGCUCGgugGCCACgGu -3'
miRNA:   3'- -CCUGA--UGGGGGU-------CUCGGGC---UGGUGgC- -5'
4007 5' -60.3 NC_001650.1 + 66313 0.69 0.618203
Target:  5'- gGGAC-GCCCCCAaagaucAGCUCGgucACCGCCGc -3'
miRNA:   3'- -CCUGaUGGGGGUc-----UCGGGC---UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 66416 0.77 0.242911
Target:  5'- gGGugUgcggGCCCgUGGAGCCCGccGCCACCGg -3'
miRNA:   3'- -CCugA----UGGGgGUCUCGGGC--UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 67112 0.66 0.804644
Target:  5'- -aGCUGCCCCCGcc-CCUGGCCGCg- -3'
miRNA:   3'- ccUGAUGGGGGUcucGGGCUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 67674 0.7 0.560344
Target:  5'- aGcCUGCCUgCAGAGCCUGaACCcCCGg -3'
miRNA:   3'- cCuGAUGGGgGUCUCGGGC-UGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 68849 0.72 0.45913
Target:  5'- gGGACgugccGCgCCCCGG-GCCCauGGCCGCCa -3'
miRNA:   3'- -CCUGa----UG-GGGGUCuCGGG--CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 68954 0.72 0.450396
Target:  5'- uGGCUACCaCCCu--GCCCGGCCuggcuCCGg -3'
miRNA:   3'- cCUGAUGG-GGGucuCGGGCUGGu----GGC- -5'
4007 5' -60.3 NC_001650.1 + 69155 0.7 0.541356
Target:  5'- gGGGCgcgagcGCCUCCAG-GUCCGGCCAguCCGc -3'
miRNA:   3'- -CCUGa-----UGGGGGUCuCGGGCUGGU--GGC- -5'
4007 5' -60.3 NC_001650.1 + 69777 0.67 0.721214
Target:  5'- aGGAa-ACCCCCaagcAGaAGCCCGccaaggcaaagcccGCCGCCGc -3'
miRNA:   3'- -CCUgaUGGGGG----UC-UCGGGC--------------UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 71686 0.7 0.569907
Target:  5'- uGGGCaacauCCCCCAGucCCUGGCCcccGCCGg -3'
miRNA:   3'- -CCUGau---GGGGGUCucGGGCUGG---UGGC- -5'
4007 5' -60.3 NC_001650.1 + 71775 0.66 0.812997
Target:  5'- uGAUUGCCCCa----CCUGACCACCc -3'
miRNA:   3'- cCUGAUGGGGgucucGGGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 73472 0.67 0.742647
Target:  5'- cGGGCUucgccugccacgGCCCCCcGGGCCUcaGCCACgGc -3'
miRNA:   3'- -CCUGA------------UGGGGGuCUCGGGc-UGGUGgC- -5'
4007 5' -60.3 NC_001650.1 + 74523 0.66 0.79615
Target:  5'- ---gUGCCCCCgguguuuggcagGGAGgCCG-CCACCGu -3'
miRNA:   3'- ccugAUGGGGG------------UCUCgGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 76889 0.73 0.391966
Target:  5'- gGGGCUGCCCCCGGGGgUCuccguggggGACCugCu -3'
miRNA:   3'- -CCUGAUGGGGGUCUCgGG---------CUGGugGc -5'
4007 5' -60.3 NC_001650.1 + 76953 0.67 0.714614
Target:  5'- aGACcaccGCCCCCAu-GCCCGugC-CCGa -3'
miRNA:   3'- cCUGa---UGGGGGUcuCGGGCugGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 76993 0.67 0.733379
Target:  5'- cGGACUACCUUCAGAGaUuuGACUcggucaggguGCCc -3'
miRNA:   3'- -CCUGAUGGGGGUCUC-GggCUGG----------UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.