Results 81 - 100 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 77354 | 0.66 | 0.804644 |
Target: 5'- aGACcugucauCCaCCCcGGGCCCGACC-CCa -3' miRNA: 3'- cCUGau-----GG-GGGuCUCGGGCUGGuGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 82500 | 0.67 | 0.714614 |
Target: 5'- cGACgACCCCgAGuGCCUGuACCGCgCGc -3' miRNA: 3'- cCUGaUGGGGgUCuCGGGC-UGGUG-GC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 85237 | 0.66 | 0.812997 |
Target: 5'- -uACUACCCCCucAGCCCccuGGCCuuCGg -3' miRNA: 3'- ccUGAUGGGGGucUCGGG---CUGGugGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 85340 | 0.71 | 0.485855 |
Target: 5'- uGGGCUuCCUCCAGAGCCCcaagGACgGCa- -3' miRNA: 3'- -CCUGAuGGGGGUCUCGGG----CUGgUGgc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 87631 | 0.66 | 0.787522 |
Target: 5'- -aGCUGCCUCUcaaauGAGCuuGACCAUUGu -3' miRNA: 3'- ccUGAUGGGGGu----CUCGggCUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 88727 | 0.67 | 0.739875 |
Target: 5'- gGGGCUccucggggaaGCCCCCGGccggcaagcggggcAGgCCGACgCGCCu -3' miRNA: 3'- -CCUGA----------UGGGGGUC--------------UCgGGCUG-GUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 89489 | 0.7 | 0.560344 |
Target: 5'- uGGACgcgUACCCCaGGAGCCCaaagaGCCGCuCGg -3' miRNA: 3'- -CCUG---AUGGGGgUCUCGGGc----UGGUG-GC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 90838 | 0.66 | 0.820389 |
Target: 5'- gGGGgUGCCCaucuuggCCAGcGCCCcaaaGGCCGCCc -3' miRNA: 3'- -CCUgAUGGG-------GGUCuCGGG----CUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 91280 | 0.66 | 0.773458 |
Target: 5'- gGGACggucuuugccgccaGCCCCCGGAuCCUGcCCACUa -3' miRNA: 3'- -CCUGa-------------UGGGGGUCUcGGGCuGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 93396 | 0.66 | 0.769896 |
Target: 5'- uGGGC-ACCCCCA---CCCugugGACCACCa -3' miRNA: 3'- -CCUGaUGGGGGUcucGGG----CUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 94093 | 0.66 | 0.812997 |
Target: 5'- -aACUACUCCCAGuucauagaccaGGaCCUGuCCGCCGu -3' miRNA: 3'- ccUGAUGGGGGUC-----------UC-GGGCuGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 95498 | 0.69 | 0.598813 |
Target: 5'- gGGGCUuCCCCgaGGAGCCCccucCCGCCc -3' miRNA: 3'- -CCUGAuGGGGg-UCUCGGGcu--GGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 96176 | 0.66 | 0.812997 |
Target: 5'- aGGCuUGCCCUCAGucacCCUGACCGgCGa -3' miRNA: 3'- cCUG-AUGGGGGUCuc--GGGCUGGUgGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 102344 | 0.66 | 0.787522 |
Target: 5'- gGGACcACUCCCAGAuaCCGGUCAUCu -3' miRNA: 3'- -CCUGaUGGGGGUCUcgGGCUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 103959 | 0.66 | 0.769896 |
Target: 5'- gGGACgcacGCCUCCAGcagcAGCCCGuuCACg- -3' miRNA: 3'- -CCUGa---UGGGGGUC----UCGGGCugGUGgc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 105104 | 0.67 | 0.760913 |
Target: 5'- gGGACUGgCCCUccu-CCCGcCCGCCGa -3' miRNA: 3'- -CCUGAUgGGGGucucGGGCuGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 105142 | 0.68 | 0.676386 |
Target: 5'- cGGA--GCCaggCCCGGGGCCCGAC-GCCu -3' miRNA: 3'- -CCUgaUGG---GGGUCUCGGGCUGgUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 106258 | 0.68 | 0.705132 |
Target: 5'- uGGGCgcgacgGCCCCuCGGuGCCuCGcaGCCGCCc -3' miRNA: 3'- -CCUGa-----UGGGG-GUCuCGG-GC--UGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 107181 | 0.68 | 0.705132 |
Target: 5'- cGGGCU-CCCCCGaGGCCCagcGCgGCCu -3' miRNA: 3'- -CCUGAuGGGGGUcUCGGGc--UGgUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 109018 | 0.7 | 0.550825 |
Target: 5'- uGGACUuugaccuCCCCCuGAaaaaGCCCGGCCugaGCCu -3' miRNA: 3'- -CCUGAu------GGGGGuCU----CGGGCUGG---UGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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