miRNA display CGI


Results 101 - 120 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 109165 0.68 0.704181
Target:  5'- cGGcCUGCCCCC--GGCCCGAgUgggacgaGCCGu -3'
miRNA:   3'- -CCuGAUGGGGGucUCGGGCUgG-------UGGC- -5'
4007 5' -60.3 NC_001650.1 + 109378 0.69 0.637632
Target:  5'- cGGACggGCCCCUGGAcaCCGgcaucuACCACCGg -3'
miRNA:   3'- -CCUGa-UGGGGGUCUcgGGC------UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 109487 0.68 0.695595
Target:  5'- cGugUGCCaCCCGGGGUCgccggacaaGGCCGCCu -3'
miRNA:   3'- cCugAUGG-GGGUCUCGGg--------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 111489 0.67 0.751827
Target:  5'- aGGCcACCCCCGGGcuggugaucCCCG-CCGCCGc -3'
miRNA:   3'- cCUGaUGGGGGUCUc--------GGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 112584 0.69 0.637632
Target:  5'- aGGCcacACCCCUGGcGCCCGGCgCGCCc -3'
miRNA:   3'- cCUGa--UGGGGGUCuCGGGCUG-GUGGc -5'
4007 5' -60.3 NC_001650.1 + 112632 0.68 0.68505
Target:  5'- gGGGgUggACCUCCaguuugaGGAGCUCGugCGCCGa -3'
miRNA:   3'- -CCUgA--UGGGGG-------UCUCGGGCugGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 113582 0.67 0.741724
Target:  5'- aGGugUGCuCCaCCAGgugGGCCUugaacauGGCCACCa -3'
miRNA:   3'- -CCugAUG-GG-GGUC---UCGGG-------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 114166 0.7 0.57951
Target:  5'- uGGACgcacagagACCCCCAaaagaaaAGCUCGuCCACCGc -3'
miRNA:   3'- -CCUGa-------UGGGGGUc------UCGGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 114263 0.69 0.627916
Target:  5'- aGGCcGCCCCCAGcaucccGGuCCCGaagGCCGCCa -3'
miRNA:   3'- cCUGaUGGGGGUC------UC-GGGC---UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 114507 0.69 0.598813
Target:  5'- aGACUGCuCCUCGGGGCCUGcugguACC-CCGu -3'
miRNA:   3'- cCUGAUG-GGGGUCUCGGGC-----UGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 114958 0.7 0.589148
Target:  5'- uGGGCcACCUgaAGAGCCCagcGCCGCCGc -3'
miRNA:   3'- -CCUGaUGGGggUCUCGGGc--UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 115190 0.67 0.732447
Target:  5'- aGGACgucggACCUCacaaAGucaggccugcacaGGCCCGGCCGCUGc -3'
miRNA:   3'- -CCUGa----UGGGGg---UC-------------UCGGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 115465 0.73 0.424756
Target:  5'- gGGGCaaguacGCCCCCcgGGAGaCCCGgGCCACCa -3'
miRNA:   3'- -CCUGa-----UGGGGG--UCUC-GGGC-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 115658 0.66 0.804644
Target:  5'- -uGCgACCCCCGcGGcGCCCG-CUACCGc -3'
miRNA:   3'- ccUGaUGGGGGU-CU-CGGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 117013 0.7 0.589148
Target:  5'- aGGACUGgCUCUgguccacaaacGGGGaCCUGGCCGCCGc -3'
miRNA:   3'- -CCUGAUgGGGG-----------UCUC-GGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 117476 0.66 0.818757
Target:  5'- cGGAgcGCCCCCcaccgucaccagcuGGuuacuGGCCCuGACCGCCu -3'
miRNA:   3'- -CCUgaUGGGGG--------------UC-----UCGGG-CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 118115 0.66 0.821203
Target:  5'- -uACaGCCCcgCCAGGuGCCCGcCCACCu -3'
miRNA:   3'- ccUGaUGGG--GGUCU-CGGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 119114 0.72 0.476863
Target:  5'- cGGGC-AUgCCCAGAuGCgCGGCCGCCa -3'
miRNA:   3'- -CCUGaUGgGGGUCU-CGgGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 120933 0.66 0.778768
Target:  5'- -cGCUGgCCa-AGAGCCUgcuGACCACCGa -3'
miRNA:   3'- ccUGAUgGGggUCUCGGG---CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 121602 0.7 0.541356
Target:  5'- aGGGCagcGCCCUCGGguGGCCCGuCCACUc -3'
miRNA:   3'- -CCUGa--UGGGGGUC--UCGGGCuGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.