miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 181161 0.66 0.769896
Target:  5'- gGGAg-GCCUCCGG-GCCCGGCgACg- -3'
miRNA:   3'- -CCUgaUGGGGGUCuCGGGCUGgUGgc -5'
4007 5' -60.3 NC_001650.1 + 180612 0.68 0.675421
Target:  5'- aGGCUuCCCCCGGAgagaggcGCCCccugGACCcCCGg -3'
miRNA:   3'- cCUGAuGGGGGUCU-------CGGG----CUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 179501 0.72 0.441754
Target:  5'- cGGAggGCCUCCGGAGCCCcAUgGCUGg -3'
miRNA:   3'- -CCUgaUGGGGGUCUCGGGcUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 179431 0.7 0.568949
Target:  5'- aGGcCUACCCCUcGAGCCCcGGCCuggauuugcagagGCCu -3'
miRNA:   3'- -CCuGAUGGGGGuCUCGGG-CUGG-------------UGGc -5'
4007 5' -60.3 NC_001650.1 + 179214 0.71 0.504077
Target:  5'- cGGAggcCCCCCGGAGCCCacCCACUa -3'
miRNA:   3'- -CCUgauGGGGGUCUCGGGcuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 179177 0.69 0.647344
Target:  5'- ----cACCCCCGGAGggaccCCCGuCCGCCu -3'
miRNA:   3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 178564 0.68 0.654136
Target:  5'- gGGGCUACCCaCUA-AGCCCcgggggucuaagggGGCCGCCc -3'
miRNA:   3'- -CCUGAUGGG-GGUcUCGGG--------------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 175038 0.66 0.821203
Target:  5'- ----cACCCCCAuAGCCCccACCACCc -3'
miRNA:   3'- ccugaUGGGGGUcUCGGGc-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 174918 0.66 0.769896
Target:  5'- aGGACUGgCCUa--GGCCCu-CCACCGg -3'
miRNA:   3'- -CCUGAUgGGGgucUCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 174646 0.68 0.657045
Target:  5'- uGGACU-CCCCCAuuGGGCCCccguguguaAUCACCa -3'
miRNA:   3'- -CCUGAuGGGGGU--CUCGGGc--------UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 174102 0.66 0.812997
Target:  5'- gGGACaGCCCCCAuuGGGCCacgGGCUuuauuGCCc -3'
miRNA:   3'- -CCUGaUGGGGGU--CUCGGg--CUGG-----UGGc -5'
4007 5' -60.3 NC_001650.1 + 173756 0.66 0.812997
Target:  5'- uGGACaGCCCCCAuuGGGCCaugGGCUuuauuGCCc -3'
miRNA:   3'- -CCUGaUGGGGGU--CUCGGg--CUGG-----UGGc -5'
4007 5' -60.3 NC_001650.1 + 172536 0.67 0.724032
Target:  5'- uGGGCagGCCCCCuaGGCCCccauugGGCCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGucUCGGG------CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 171432 0.67 0.749083
Target:  5'- gGGGCUccggagGCCCUCcGuGCCCGGCUcggggaagaccuagGCCGg -3'
miRNA:   3'- -CCUGA------UGGGGGuCuCGGGCUGG--------------UGGC- -5'
4007 5' -60.3 NC_001650.1 + 167781 0.66 0.769896
Target:  5'- uGGGCccACCCCCGG-GCCC--CCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGUCuCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 167318 0.66 0.769896
Target:  5'- cGGGCUGCCgCCCucccccGGGCCC--CCAUUGg -3'
miRNA:   3'- -CCUGAUGG-GGGu-----CUCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 166147 0.67 0.760913
Target:  5'- ----aGCCCCCAGAGugacaCCCGcCCACUc -3'
miRNA:   3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 164909 0.7 0.57951
Target:  5'- ----cACCCCCcGGGCCCcaccgcGGCCGCCGc -3'
miRNA:   3'- ccugaUGGGGGuCUCGGG------CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 164870 0.67 0.751827
Target:  5'- aGGAUgggagGCCCugaCUAGAGCgCG-CCGCCGc -3'
miRNA:   3'- -CCUGa----UGGG---GGUCUCGgGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 164426 0.66 0.812997
Target:  5'- gGGGCgUGCUCuaCCAGAGaccCCCGGCuCACCc -3'
miRNA:   3'- -CCUG-AUGGG--GGUCUC---GGGCUG-GUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.