miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 163475 0.66 0.795293
Target:  5'- aGGGCUcCCCCCAGA-CCCacaagaaguggauGACCcuaGCCu -3'
miRNA:   3'- -CCUGAuGGGGGUCUcGGG-------------CUGG---UGGc -5'
4007 5' -60.3 NC_001650.1 + 162800 0.76 0.272076
Target:  5'- gGGGCUgACCCCCGGGGCCguGCUGCCa -3'
miRNA:   3'- -CCUGA-UGGGGGUCUCGGgcUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 162403 0.67 0.742647
Target:  5'- gGGGgUGgucgccucccccUCCCCGGGGCCuCGGCCGgCGc -3'
miRNA:   3'- -CCUgAU------------GGGGGUCUCGG-GCUGGUgGC- -5'
4007 5' -60.3 NC_001650.1 + 162211 0.66 0.816298
Target:  5'- ----gACCCCCAGAuuauaccuagcuugcGCCCaugGACCACUa -3'
miRNA:   3'- ccugaUGGGGGUCU---------------CGGG---CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 161538 0.68 0.695595
Target:  5'- uGGACgGCCgCCAGgauggaGGCCa-GCCGCCGg -3'
miRNA:   3'- -CCUGaUGGgGGUC------UCGGgcUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 161163 0.66 0.812997
Target:  5'- aGACcucaacACCCCCGGGaccaaguaacuuGCCagaGACCACUGa -3'
miRNA:   3'- cCUGa-----UGGGGGUCU------------CGGg--CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 160832 0.73 0.391966
Target:  5'- aGGGggGCCCgCCgAGGGUUCGACCACCa -3'
miRNA:   3'- -CCUgaUGGG-GG-UCUCGGGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 159645 0.66 0.787522
Target:  5'- gGGAC-ACCgCCAGGGCgUCGaACC-CCGa -3'
miRNA:   3'- -CCUGaUGGgGGUCUCG-GGC-UGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 159294 0.72 0.45913
Target:  5'- gGGAC--CCCCgCAGGGUCCuaaaGGCCACCGc -3'
miRNA:   3'- -CCUGauGGGG-GUCUCGGG----CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 157085 0.72 0.433207
Target:  5'- aGGACUGCCUcuCCAGGGcCCCGAUgAggcCCGg -3'
miRNA:   3'- -CCUGAUGGG--GGUCUC-GGGCUGgU---GGC- -5'
4007 5' -60.3 NC_001650.1 + 155678 0.67 0.724032
Target:  5'- gGGACgagGCCggucCUCGGGGCCC-ACCACgGa -3'
miRNA:   3'- -CCUGa--UGG----GGGUCUCGGGcUGGUGgC- -5'
4007 5' -60.3 NC_001650.1 + 154986 0.7 0.560344
Target:  5'- cGGGgaGgUCCU-GAGCCCGGCCACCc -3'
miRNA:   3'- -CCUgaUgGGGGuCUCGGGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 154454 0.69 0.6085
Target:  5'- cGGACgaggACCCagaguaCUGGGGCgCGGCCGCCu -3'
miRNA:   3'- -CCUGa---UGGG------GGUCUCGgGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 153758 0.74 0.345978
Target:  5'- uGGGCgagACCCCCcuGAGCCgccccagaaaGGCCACCGu -3'
miRNA:   3'- -CCUGa--UGGGGGu-CUCGGg---------CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 147544 0.67 0.714614
Target:  5'- aGGAUguaGCCCUCcc-GCCCGGCCACg- -3'
miRNA:   3'- -CCUGa--UGGGGGucuCGGGCUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 145936 0.66 0.812997
Target:  5'- cGGGCU-CCCUguGccccAGCCCGGCC-CgGg -3'
miRNA:   3'- -CCUGAuGGGGguC----UCGGGCUGGuGgC- -5'
4007 5' -60.3 NC_001650.1 + 145649 0.68 0.676386
Target:  5'- aGGGC-ACCCCCAGccccauguccCCCGAgCGCUGg -3'
miRNA:   3'- -CCUGaUGGGGGUCuc--------GGGCUgGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 142771 0.67 0.733379
Target:  5'- aGGGCguuUCCCCAGGGC--GGCgGCCGg -3'
miRNA:   3'- -CCUGau-GGGGGUCUCGggCUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 136726 0.67 0.742647
Target:  5'- ----aACCCCCaccgugucAGAGacCCCGGCCACUGa -3'
miRNA:   3'- ccugaUGGGGG--------UCUC--GGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 136165 0.7 0.57951
Target:  5'- aGGCgcCCCCCGcGGCCuCGACC-CCGa -3'
miRNA:   3'- cCUGauGGGGGUcUCGG-GCUGGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.