miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 136065 0.68 0.705132
Target:  5'- -uACU-CCCCCAGccCCgCGGCCGCCa -3'
miRNA:   3'- ccUGAuGGGGGUCucGG-GCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 135284 0.66 0.79615
Target:  5'- cGGGCa--CCUCAGAGgUguUGACCACCGu -3'
miRNA:   3'- -CCUGaugGGGGUCUCgG--GCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 134698 0.68 0.695595
Target:  5'- aGGCUGacCCCCCGGAuGCCCcagaGGCgGCUGa -3'
miRNA:   3'- cCUGAU--GGGGGUCU-CGGG----CUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 134394 1.1 0.001376
Target:  5'- gGGACUACCCCCAGAGCCCGACCACCGa -3'
miRNA:   3'- -CCUGAUGGGGGUCUCGGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 134297 0.72 0.450396
Target:  5'- aGGC--CCCCCAGGGCCaGACUACCc -3'
miRNA:   3'- cCUGauGGGGGUCUCGGgCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 134100 0.68 0.702277
Target:  5'- aGGCcaUGCCCgCAGAuagagagaucaaucGCCCGcACCACCa -3'
miRNA:   3'- cCUG--AUGGGgGUCU--------------CGGGC-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 133931 0.73 0.400008
Target:  5'- gGGGCgcCCCCCAGAcCCCGGCaggcgGCCGc -3'
miRNA:   3'- -CCUGauGGGGGUCUcGGGCUGg----UGGC- -5'
4007 5' -60.3 NC_001650.1 + 133306 0.66 0.812997
Target:  5'- gGGGCUGCCCaggaggcgCCGGGcgaggggacGCCCGAgCCAgCa -3'
miRNA:   3'- -CCUGAUGGG--------GGUCU---------CGGGCU-GGUgGc -5'
4007 5' -60.3 NC_001650.1 + 133301 0.71 0.504077
Target:  5'- gGGGCaggugACCCCCuGGGUCaCGugCACCu -3'
miRNA:   3'- -CCUGa----UGGGGGuCUCGG-GCugGUGGc -5'
4007 5' -60.3 NC_001650.1 + 132234 0.67 0.760913
Target:  5'- gGGAaugUACCCCCAacGCCUuuACCGCCGc -3'
miRNA:   3'- -CCUg--AUGGGGGUcuCGGGc-UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 132104 0.71 0.504077
Target:  5'- gGGACccccUACCCCUAcGGgCCGcCCACCGg -3'
miRNA:   3'- -CCUG----AUGGGGGUcUCgGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 131810 0.66 0.769002
Target:  5'- aGGGCcuuCCUguucaggCCGGGGCgguggCCGGCCGCCGa -3'
miRNA:   3'- -CCUGau-GGG-------GGUCUCG-----GGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 131748 0.67 0.760913
Target:  5'- aGGACauguacuuCCCCCGGAgcagGCCCGAgguggaCCACUu -3'
miRNA:   3'- -CCUGau------GGGGGUCU----CGGGCU------GGUGGc -5'
4007 5' -60.3 NC_001650.1 + 131652 0.66 0.820389
Target:  5'- cGACgACCCCCcGAcucgaacGCCCccGCCGCCGc -3'
miRNA:   3'- cCUGaUGGGGGuCU-------CGGGc-UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 131565 0.66 0.812997
Target:  5'- gGGGCggagaaACCCCgAGGccgagguccuGCCCGugacCCACCGc -3'
miRNA:   3'- -CCUGa-----UGGGGgUCU----------CGGGCu---GGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 131427 0.68 0.695595
Target:  5'- --cCUGCgCCCGG-GCCCcgagGGCCGCCGc -3'
miRNA:   3'- ccuGAUGgGGGUCuCGGG----CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 127399 0.68 0.695595
Target:  5'- aGGA--GCCCCgAGAGCCCGG--ACCu -3'
miRNA:   3'- -CCUgaUGGGGgUCUCGGGCUggUGGc -5'
4007 5' -60.3 NC_001650.1 + 127311 0.66 0.79615
Target:  5'- cGACUACCacgcccaCCAGAGCaaauCCGCCa -3'
miRNA:   3'- cCUGAUGGg------GGUCUCGggcuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 127137 0.66 0.804644
Target:  5'- aGACcaccgGgCCCCGGAGCCUGcgaACC-CCGu -3'
miRNA:   3'- cCUGa----UgGGGGUCUCGGGC---UGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 126667 0.68 0.676386
Target:  5'- cGGGCU-CCCaCCGGAcgaaaaguggcuGCCCauGACUGCCGa -3'
miRNA:   3'- -CCUGAuGGG-GGUCU------------CGGG--CUGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.