miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 126470 0.68 0.676386
Target:  5'- cGGGCUAcuCCCCCGucGCCC-ACC-CCGc -3'
miRNA:   3'- -CCUGAU--GGGGGUcuCGGGcUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 126326 0.67 0.751827
Target:  5'- cGGGCUACUauCCCGc-GCCCuACCACCc -3'
miRNA:   3'- -CCUGAUGG--GGGUcuCGGGcUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 125822 0.7 0.541356
Target:  5'- aGGGCUacgcguccccgGCCCCCgAGAGCCUGcCCgaGCCc -3'
miRNA:   3'- -CCUGA-----------UGGGGG-UCUCGGGCuGG--UGGc -5'
4007 5' -60.3 NC_001650.1 + 125384 0.66 0.787522
Target:  5'- gGGGCUcaucugccuCUCCCGG-GCCCGAUC-CCa -3'
miRNA:   3'- -CCUGAu--------GGGGGUCuCGGGCUGGuGGc -5'
4007 5' -60.3 NC_001650.1 + 125248 0.67 0.760913
Target:  5'- -uGCUcCUCCCGG-GCCCGugccagaaGCCGCCGc -3'
miRNA:   3'- ccUGAuGGGGGUCuCGGGC--------UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 125051 0.68 0.666728
Target:  5'- cGGGCgggGCgCCUc--GCCCGGCCAUCGg -3'
miRNA:   3'- -CCUGa--UGgGGGucuCGGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 124468 0.67 0.742647
Target:  5'- gGGGCgccucGCCCCCGGGGgCCacgGGCC-CCu -3'
miRNA:   3'- -CCUGa----UGGGGGUCUCgGG---CUGGuGGc -5'
4007 5' -60.3 NC_001650.1 + 124219 0.72 0.450396
Target:  5'- gGGACgugcaggGCCUgaUCGGGGCCCaGACCGCCc -3'
miRNA:   3'- -CCUGa------UGGG--GGUCUCGGG-CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 123526 0.7 0.541356
Target:  5'- aGGGgUGCCCCUcaaggacaggacGGAGCUgGACCACg- -3'
miRNA:   3'- -CCUgAUGGGGG------------UCUCGGgCUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 123335 0.7 0.549876
Target:  5'- uGACgggGCUCCUGGAggugcugGCCuCGGCCACCGa -3'
miRNA:   3'- cCUGa--UGGGGGUCU-------CGG-GCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 121602 0.7 0.541356
Target:  5'- aGGGCagcGCCCUCGGguGGCCCGuCCACUc -3'
miRNA:   3'- -CCUGa--UGGGGGUC--UCGGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 120933 0.66 0.778768
Target:  5'- -cGCUGgCCa-AGAGCCUgcuGACCACCGa -3'
miRNA:   3'- ccUGAUgGGggUCUCGGG---CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 119114 0.72 0.476863
Target:  5'- cGGGC-AUgCCCAGAuGCgCGGCCGCCa -3'
miRNA:   3'- -CCUGaUGgGGGUCU-CGgGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 118115 0.66 0.821203
Target:  5'- -uACaGCCCcgCCAGGuGCCCGcCCACCu -3'
miRNA:   3'- ccUGaUGGG--GGUCU-CGGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 117476 0.66 0.818757
Target:  5'- cGGAgcGCCCCCcaccgucaccagcuGGuuacuGGCCCuGACCGCCu -3'
miRNA:   3'- -CCUgaUGGGGG--------------UC-----UCGGG-CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 117013 0.7 0.589148
Target:  5'- aGGACUGgCUCUgguccacaaacGGGGaCCUGGCCGCCGc -3'
miRNA:   3'- -CCUGAUgGGGG-----------UCUC-GGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 115658 0.66 0.804644
Target:  5'- -uGCgACCCCCGcGGcGCCCG-CUACCGc -3'
miRNA:   3'- ccUGaUGGGGGU-CU-CGGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 115465 0.73 0.424756
Target:  5'- gGGGCaaguacGCCCCCcgGGAGaCCCGgGCCACCa -3'
miRNA:   3'- -CCUGa-----UGGGGG--UCUC-GGGC-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 115190 0.67 0.732447
Target:  5'- aGGACgucggACCUCacaaAGucaggccugcacaGGCCCGGCCGCUGc -3'
miRNA:   3'- -CCUGa----UGGGGg---UC-------------UCGGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 114958 0.7 0.589148
Target:  5'- uGGGCcACCUgaAGAGCCCagcGCCGCCGc -3'
miRNA:   3'- -CCUGaUGGGggUCUCGGGc--UGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.