miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 114507 0.69 0.598813
Target:  5'- aGACUGCuCCUCGGGGCCUGcugguACC-CCGu -3'
miRNA:   3'- cCUGAUG-GGGGUCUCGGGC-----UGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 114263 0.69 0.627916
Target:  5'- aGGCcGCCCCCAGcaucccGGuCCCGaagGCCGCCa -3'
miRNA:   3'- cCUGaUGGGGGUC------UC-GGGC---UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 114166 0.7 0.57951
Target:  5'- uGGACgcacagagACCCCCAaaagaaaAGCUCGuCCACCGc -3'
miRNA:   3'- -CCUGa-------UGGGGGUc------UCGGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 113582 0.67 0.741724
Target:  5'- aGGugUGCuCCaCCAGgugGGCCUugaacauGGCCACCa -3'
miRNA:   3'- -CCugAUG-GG-GGUC---UCGGG-------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 112632 0.68 0.68505
Target:  5'- gGGGgUggACCUCCaguuugaGGAGCUCGugCGCCGa -3'
miRNA:   3'- -CCUgA--UGGGGG-------UCUCGGGCugGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 112584 0.69 0.637632
Target:  5'- aGGCcacACCCCUGGcGCCCGGCgCGCCc -3'
miRNA:   3'- cCUGa--UGGGGGUCuCGGGCUG-GUGGc -5'
4007 5' -60.3 NC_001650.1 + 111489 0.67 0.751827
Target:  5'- aGGCcACCCCCGGGcuggugaucCCCG-CCGCCGc -3'
miRNA:   3'- cCUGaUGGGGGUCUc--------GGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 109487 0.68 0.695595
Target:  5'- cGugUGCCaCCCGGGGUCgccggacaaGGCCGCCu -3'
miRNA:   3'- cCugAUGG-GGGUCUCGGg--------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 109378 0.69 0.637632
Target:  5'- cGGACggGCCCCUGGAcaCCGgcaucuACCACCGg -3'
miRNA:   3'- -CCUGa-UGGGGGUCUcgGGC------UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 109165 0.68 0.704181
Target:  5'- cGGcCUGCCCCC--GGCCCGAgUgggacgaGCCGu -3'
miRNA:   3'- -CCuGAUGGGGGucUCGGGCUgG-------UGGC- -5'
4007 5' -60.3 NC_001650.1 + 109018 0.7 0.550825
Target:  5'- uGGACUuugaccuCCCCCuGAaaaaGCCCGGCCugaGCCu -3'
miRNA:   3'- -CCUGAu------GGGGGuCU----CGGGCUGG---UGGc -5'
4007 5' -60.3 NC_001650.1 + 107181 0.68 0.705132
Target:  5'- cGGGCU-CCCCCGaGGCCCagcGCgGCCu -3'
miRNA:   3'- -CCUGAuGGGGGUcUCGGGc--UGgUGGc -5'
4007 5' -60.3 NC_001650.1 + 106258 0.68 0.705132
Target:  5'- uGGGCgcgacgGCCCCuCGGuGCCuCGcaGCCGCCc -3'
miRNA:   3'- -CCUGa-----UGGGG-GUCuCGG-GC--UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 105142 0.68 0.676386
Target:  5'- cGGA--GCCaggCCCGGGGCCCGAC-GCCu -3'
miRNA:   3'- -CCUgaUGG---GGGUCUCGGGCUGgUGGc -5'
4007 5' -60.3 NC_001650.1 + 105104 0.67 0.760913
Target:  5'- gGGACUGgCCCUccu-CCCGcCCGCCGa -3'
miRNA:   3'- -CCUGAUgGGGGucucGGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 103959 0.66 0.769896
Target:  5'- gGGACgcacGCCUCCAGcagcAGCCCGuuCACg- -3'
miRNA:   3'- -CCUGa---UGGGGGUC----UCGGGCugGUGgc -5'
4007 5' -60.3 NC_001650.1 + 102344 0.66 0.787522
Target:  5'- gGGACcACUCCCAGAuaCCGGUCAUCu -3'
miRNA:   3'- -CCUGaUGGGGGUCUcgGGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 96176 0.66 0.812997
Target:  5'- aGGCuUGCCCUCAGucacCCUGACCGgCGa -3'
miRNA:   3'- cCUG-AUGGGGGUCuc--GGGCUGGUgGC- -5'
4007 5' -60.3 NC_001650.1 + 95498 0.69 0.598813
Target:  5'- gGGGCUuCCCCgaGGAGCCCccucCCGCCc -3'
miRNA:   3'- -CCUGAuGGGGg-UCUCGGGcu--GGUGGc -5'
4007 5' -60.3 NC_001650.1 + 94093 0.66 0.812997
Target:  5'- -aACUACUCCCAGuucauagaccaGGaCCUGuCCGCCGu -3'
miRNA:   3'- ccUGAUGGGGGUC-----------UC-GGGCuGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.