miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 49288 0.7 0.569907
Target:  5'- -aGCUGCCCCCGG-GCCUggagcuGGCCAgCGu -3'
miRNA:   3'- ccUGAUGGGGGUCuCGGG------CUGGUgGC- -5'
4007 5' -60.3 NC_001650.1 + 37324 0.71 0.522589
Target:  5'- gGGGCUACCgCCCAGAGCa-GGUCACgGg -3'
miRNA:   3'- -CCUGAUGG-GGGUCUCGggCUGGUGgC- -5'
4007 5' -60.3 NC_001650.1 + 36092 0.71 0.522589
Target:  5'- aGGugUaccaguGCCCCuCGGAGCUgGACCugCu -3'
miRNA:   3'- -CCugA------UGGGG-GUCUCGGgCUGGugGc -5'
4007 5' -60.3 NC_001650.1 + 45172 0.71 0.531942
Target:  5'- aGGCU-CCCCCGGAGCCgGguACCcCCa -3'
miRNA:   3'- cCUGAuGGGGGUCUCGGgC--UGGuGGc -5'
4007 5' -60.3 NC_001650.1 + 123526 0.7 0.541356
Target:  5'- aGGGgUGCCCCUcaaggacaggacGGAGCUgGACCACg- -3'
miRNA:   3'- -CCUgAUGGGGG------------UCUCGGgCUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 69155 0.7 0.541356
Target:  5'- gGGGCgcgagcGCCUCCAG-GUCCGGCCAguCCGc -3'
miRNA:   3'- -CCUGa-----UGGGGGUCuCGGGCUGGU--GGC- -5'
4007 5' -60.3 NC_001650.1 + 121602 0.7 0.541356
Target:  5'- aGGGCagcGCCCUCGGguGGCCCGuCCACUc -3'
miRNA:   3'- -CCUGa--UGGGGGUC--UCGGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 109018 0.7 0.550825
Target:  5'- uGGACUuugaccuCCCCCuGAaaaaGCCCGGCCugaGCCu -3'
miRNA:   3'- -CCUGAu------GGGGGuCU----CGGGCUGG---UGGc -5'
4007 5' -60.3 NC_001650.1 + 154986 0.7 0.560344
Target:  5'- cGGGgaGgUCCU-GAGCCCGGCCACCc -3'
miRNA:   3'- -CCUgaUgGGGGuCUCGGGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 132104 0.71 0.504077
Target:  5'- gGGACccccUACCCCUAcGGgCCGcCCACCGg -3'
miRNA:   3'- -CCUG----AUGGGGGUcUCgGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 47996 0.71 0.494928
Target:  5'- aGGACUACgCCCCGGGGCCgcucaaGugCAUa- -3'
miRNA:   3'- -CCUGAUG-GGGGUCUCGGg-----CugGUGgc -5'
4007 5' -60.3 NC_001650.1 + 85340 0.71 0.485855
Target:  5'- uGGGCUuCCUCCAGAGCCCcaagGACgGCa- -3'
miRNA:   3'- -CCUGAuGGGGGUCUCGGG----CUGgUGgc -5'
4007 5' -60.3 NC_001650.1 + 66416 0.77 0.242911
Target:  5'- gGGugUgcggGCCCgUGGAGCCCGccGCCACCGg -3'
miRNA:   3'- -CCugA----UGGGgGUCUCGGGC--UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 52778 0.74 0.345245
Target:  5'- gGGACUcgcggcggcggcgGCCCUCGGGGCCCGGgCGCa- -3'
miRNA:   3'- -CCUGA-------------UGGGGGUCUCGGGCUgGUGgc -5'
4007 5' -60.3 NC_001650.1 + 133931 0.73 0.400008
Target:  5'- gGGGCgcCCCCCAGAcCCCGGCaggcgGCCGc -3'
miRNA:   3'- -CCUGauGGGGGUCUcGGGCUGg----UGGC- -5'
4007 5' -60.3 NC_001650.1 + 134297 0.72 0.450396
Target:  5'- aGGC--CCCCCAGGGCCaGACUACCc -3'
miRNA:   3'- cCUGauGGGGGUCUCGGgCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 68954 0.72 0.450396
Target:  5'- uGGCUACCaCCCu--GCCCGGCCuggcuCCGg -3'
miRNA:   3'- cCUGAUGG-GGGucuCGGGCUGGu----GGC- -5'
4007 5' -60.3 NC_001650.1 + 68849 0.72 0.45913
Target:  5'- gGGACgugccGCgCCCCGG-GCCCauGGCCGCCa -3'
miRNA:   3'- -CCUGa----UG-GGGGUCuCGGG--CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 45282 0.72 0.476863
Target:  5'- cGGCUcACCCCCGGAGCCa-GCgACCc -3'
miRNA:   3'- cCUGA-UGGGGGUCUCGGgcUGgUGGc -5'
4007 5' -60.3 NC_001650.1 + 119114 0.72 0.476863
Target:  5'- cGGGC-AUgCCCAGAuGCgCGGCCGCCa -3'
miRNA:   3'- -CCUGaUGgGGGUCU-CGgGCUGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.