Results 41 - 60 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 68954 | 0.72 | 0.450396 |
Target: 5'- uGGCUACCaCCCu--GCCCGGCCuggcuCCGg -3' miRNA: 3'- cCUGAUGG-GGGucuCGGGCUGGu----GGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 134297 | 0.72 | 0.450396 |
Target: 5'- aGGC--CCCCCAGGGCCaGACUACCc -3' miRNA: 3'- cCUGauGGGGGUCUCGGgCUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 133931 | 0.73 | 0.400008 |
Target: 5'- gGGGCgcCCCCCAGAcCCCGGCaggcgGCCGc -3' miRNA: 3'- -CCUGauGGGGGUCUcGGGCUGg----UGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 52778 | 0.74 | 0.345245 |
Target: 5'- gGGACUcgcggcggcggcgGCCCUCGGGGCCCGGgCGCa- -3' miRNA: 3'- -CCUGA-------------UGGGGGUCUCGGGCUgGUGgc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 66416 | 0.77 | 0.242911 |
Target: 5'- gGGugUgcggGCCCgUGGAGCCCGccGCCACCGg -3' miRNA: 3'- -CCugA----UGGGgGUCUCGGGC--UGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 45172 | 0.71 | 0.531942 |
Target: 5'- aGGCU-CCCCCGGAGCCgGguACCcCCa -3' miRNA: 3'- cCUGAuGGGGGUCUCGGgC--UGGuGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 123526 | 0.7 | 0.541356 |
Target: 5'- aGGGgUGCCCCUcaaggacaggacGGAGCUgGACCACg- -3' miRNA: 3'- -CCUgAUGGGGG------------UCUCGGgCUGGUGgc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 109378 | 0.69 | 0.637632 |
Target: 5'- cGGACggGCCCCUGGAcaCCGgcaucuACCACCGg -3' miRNA: 3'- -CCUGa-UGGGGGUCUcgGGC------UGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 114263 | 0.69 | 0.627916 |
Target: 5'- aGGCcGCCCCCAGcaucccGGuCCCGaagGCCGCCa -3' miRNA: 3'- cCUGaUGGGGGUC------UC-GGGC---UGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 66313 | 0.69 | 0.618203 |
Target: 5'- gGGAC-GCCCCCAaagaucAGCUCGgucACCGCCGc -3' miRNA: 3'- -CCUGaUGGGGGUc-----UCGGGC---UGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 117013 | 0.7 | 0.589148 |
Target: 5'- aGGACUGgCUCUgguccacaaacGGGGaCCUGGCCGCCGc -3' miRNA: 3'- -CCUGAUgGGGG-----------UCUC-GGGCUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 164909 | 0.7 | 0.57951 |
Target: 5'- ----cACCCCCcGGGCCCcaccgcGGCCGCCGc -3' miRNA: 3'- ccugaUGGGGGuCUCGGG------CUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 136165 | 0.7 | 0.57951 |
Target: 5'- aGGCgcCCCCCGcGGCCuCGACC-CCGa -3' miRNA: 3'- cCUGauGGGGGUcUCGG-GCUGGuGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 114166 | 0.7 | 0.57951 |
Target: 5'- uGGACgcacagagACCCCCAaaagaaaAGCUCGuCCACCGc -3' miRNA: 3'- -CCUGa-------UGGGGGUc------UCGGGCuGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 71686 | 0.7 | 0.569907 |
Target: 5'- uGGGCaacauCCCCCAGucCCUGGCCcccGCCGg -3' miRNA: 3'- -CCUGau---GGGGGUCucGGGCUGG---UGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 49288 | 0.7 | 0.569907 |
Target: 5'- -aGCUGCCCCCGG-GCCUggagcuGGCCAgCGu -3' miRNA: 3'- ccUGAUGGGGGUCuCGGG------CUGGUgGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 154986 | 0.7 | 0.560344 |
Target: 5'- cGGGgaGgUCCU-GAGCCCGGCCACCc -3' miRNA: 3'- -CCUgaUgGGGGuCUCGGGCUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 109018 | 0.7 | 0.550825 |
Target: 5'- uGGACUuugaccuCCCCCuGAaaaaGCCCGGCCugaGCCu -3' miRNA: 3'- -CCUGAu------GGGGGuCU----CGGGCUGG---UGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 121602 | 0.7 | 0.541356 |
Target: 5'- aGGGCagcGCCCUCGGguGGCCCGuCCACUc -3' miRNA: 3'- -CCUGa--UGGGGGUC--UCGGGCuGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 69155 | 0.7 | 0.541356 |
Target: 5'- gGGGCgcgagcGCCUCCAG-GUCCGGCCAguCCGc -3' miRNA: 3'- -CCUGa-----UGGGGGUCuCGGGCUGGU--GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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