miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 154986 0.7 0.560344
Target:  5'- cGGGgaGgUCCU-GAGCCCGGCCACCc -3'
miRNA:   3'- -CCUgaUgGGGGuCUCGGGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 49288 0.7 0.569907
Target:  5'- -aGCUGCCCCCGG-GCCUggagcuGGCCAgCGu -3'
miRNA:   3'- ccUGAUGGGGGUCuCGGG------CUGGUgGC- -5'
4007 5' -60.3 NC_001650.1 + 125051 0.68 0.666728
Target:  5'- cGGGCgggGCgCCUc--GCCCGGCCAUCGg -3'
miRNA:   3'- -CCUGa--UGgGGGucuCGGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 180612 0.68 0.675421
Target:  5'- aGGCUuCCCCCGGAgagaggcGCCCccugGACCcCCGg -3'
miRNA:   3'- cCUGAuGGGGGUCU-------CGGG----CUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 145649 0.68 0.676386
Target:  5'- aGGGC-ACCCCCAGccccauguccCCCGAgCGCUGg -3'
miRNA:   3'- -CCUGaUGGGGGUCuc--------GGGCUgGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 126667 0.68 0.676386
Target:  5'- cGGGCU-CCCaCCGGAcgaaaaguggcuGCCCauGACUGCCGa -3'
miRNA:   3'- -CCUGAuGGG-GGUCU------------CGGG--CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 134698 0.68 0.695595
Target:  5'- aGGCUGacCCCCCGGAuGCCCcagaGGCgGCUGa -3'
miRNA:   3'- cCUGAU--GGGGGUCU-CGGG----CUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 109487 0.68 0.695595
Target:  5'- cGugUGCCaCCCGGGGUCgccggacaaGGCCGCCu -3'
miRNA:   3'- cCugAUGG-GGGUCUCGGg--------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 127399 0.68 0.695595
Target:  5'- aGGA--GCCCCgAGAGCCCGG--ACCu -3'
miRNA:   3'- -CCUgaUGGGGgUCUCGGGCUggUGGc -5'
4007 5' -60.3 NC_001650.1 + 109165 0.68 0.704181
Target:  5'- cGGcCUGCCCCC--GGCCCGAgUgggacgaGCCGu -3'
miRNA:   3'- -CCuGAUGGGGGucUCGGGCUgG-------UGGC- -5'
4007 5' -60.3 NC_001650.1 + 174646 0.68 0.657045
Target:  5'- uGGACU-CCCCCAuuGGGCCCccguguguaAUCACCa -3'
miRNA:   3'- -CCUGAuGGGGGU--CUCGGGc--------UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 45345 0.68 0.657045
Target:  5'- -aGCUcGCCCCCGGAGCUCGGuucccaaacCCAacCCGg -3'
miRNA:   3'- ccUGA-UGGGGGUCUCGGGCU---------GGU--GGC- -5'
4007 5' -60.3 NC_001650.1 + 71686 0.7 0.569907
Target:  5'- uGGGCaacauCCCCCAGucCCUGGCCcccGCCGg -3'
miRNA:   3'- -CCUGau---GGGGGUCucGGGCUGG---UGGC- -5'
4007 5' -60.3 NC_001650.1 + 114166 0.7 0.57951
Target:  5'- uGGACgcacagagACCCCCAaaagaaaAGCUCGuCCACCGc -3'
miRNA:   3'- -CCUGa-------UGGGGGUc------UCGGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 136165 0.7 0.57951
Target:  5'- aGGCgcCCCCCGcGGCCuCGACC-CCGa -3'
miRNA:   3'- cCUGauGGGGGUcUCGG-GCUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 164909 0.7 0.57951
Target:  5'- ----cACCCCCcGGGCCCcaccgcGGCCGCCGc -3'
miRNA:   3'- ccugaUGGGGGuCUCGGG------CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 117013 0.7 0.589148
Target:  5'- aGGACUGgCUCUgguccacaaacGGGGaCCUGGCCGCCGc -3'
miRNA:   3'- -CCUGAUgGGGG-----------UCUC-GGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 66313 0.69 0.618203
Target:  5'- gGGAC-GCCCCCAaagaucAGCUCGgucACCGCCGc -3'
miRNA:   3'- -CCUGaUGGGGGUc-----UCGGGC---UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 114263 0.69 0.627916
Target:  5'- aGGCcGCCCCCAGcaucccGGuCCCGaagGCCGCCa -3'
miRNA:   3'- cCUGaUGGGGGUC------UC-GGGC---UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 109378 0.69 0.637632
Target:  5'- cGGACggGCCCCUGGAcaCCGgcaucuACCACCGg -3'
miRNA:   3'- -CCUGa-UGGGGGUCUcgGGC------UGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.