Results 81 - 100 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 82500 | 0.67 | 0.714614 |
Target: 5'- cGACgACCCCgAGuGCCUGuACCGCgCGc -3' miRNA: 3'- cCUGaUGGGGgUCuCGGGC-UGGUG-GC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 5829 | 0.67 | 0.724032 |
Target: 5'- uGGGCagGCCCCCuaGGCCCccauugGGCCAUUGg -3' miRNA: 3'- -CCUGa-UGGGGGucUCGGG------CUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 172536 | 0.67 | 0.724032 |
Target: 5'- uGGGCagGCCCCCuaGGCCCccauugGGCCAUUGg -3' miRNA: 3'- -CCUGa-UGGGGGucUCGGG------CUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 155678 | 0.67 | 0.724032 |
Target: 5'- gGGACgagGCCggucCUCGGGGCCC-ACCACgGa -3' miRNA: 3'- -CCUGa--UGG----GGGUCUCGGGcUGGUGgC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 115190 | 0.67 | 0.732447 |
Target: 5'- aGGACgucggACCUCacaaAGucaggccugcacaGGCCCGGCCGCUGc -3' miRNA: 3'- -CCUGa----UGGGGg---UC-------------UCGGGCUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 142771 | 0.67 | 0.733379 |
Target: 5'- aGGGCguuUCCCCAGGGC--GGCgGCCGg -3' miRNA: 3'- -CCUGau-GGGGGUCUCGggCUGgUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 109165 | 0.68 | 0.704181 |
Target: 5'- cGGcCUGCCCCC--GGCCCGAgUgggacgaGCCGu -3' miRNA: 3'- -CCuGAUGGGGGucUCGGGCUgG-------UGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 127399 | 0.68 | 0.695595 |
Target: 5'- aGGA--GCCCCgAGAGCCCGG--ACCu -3' miRNA: 3'- -CCUgaUGGGGgUCUCGGGCUggUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 109487 | 0.68 | 0.695595 |
Target: 5'- cGugUGCCaCCCGGGGUCgccggacaaGGCCGCCu -3' miRNA: 3'- cCugAUGG-GGGUCUCGGg--------CUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 66313 | 0.69 | 0.618203 |
Target: 5'- gGGAC-GCCCCCAaagaucAGCUCGgucACCGCCGc -3' miRNA: 3'- -CCUGaUGGGGGUc-----UCGGGC---UGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 114263 | 0.69 | 0.627916 |
Target: 5'- aGGCcGCCCCCAGcaucccGGuCCCGaagGCCGCCa -3' miRNA: 3'- cCUGaUGGGGGUC------UC-GGGC---UGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 109378 | 0.69 | 0.637632 |
Target: 5'- cGGACggGCCCCUGGAcaCCGgcaucuACCACCGg -3' miRNA: 3'- -CCUGa-UGGGGGUCUcgGGC------UGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 45345 | 0.68 | 0.657045 |
Target: 5'- -aGCUcGCCCCCGGAGCUCGGuucccaaacCCAacCCGg -3' miRNA: 3'- ccUGA-UGGGGGUCUCGGGCU---------GGU--GGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 174646 | 0.68 | 0.657045 |
Target: 5'- uGGACU-CCCCCAuuGGGCCCccguguguaAUCACCa -3' miRNA: 3'- -CCUGAuGGGGGU--CUCGGGc--------UGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 125051 | 0.68 | 0.666728 |
Target: 5'- cGGGCgggGCgCCUc--GCCCGGCCAUCGg -3' miRNA: 3'- -CCUGa--UGgGGGucuCGGGCUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 180612 | 0.68 | 0.675421 |
Target: 5'- aGGCUuCCCCCGGAgagaggcGCCCccugGACCcCCGg -3' miRNA: 3'- cCUGAuGGGGGUCU-------CGGG----CUGGuGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 145649 | 0.68 | 0.676386 |
Target: 5'- aGGGC-ACCCCCAGccccauguccCCCGAgCGCUGg -3' miRNA: 3'- -CCUGaUGGGGGUCuc--------GGGCUgGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 126667 | 0.68 | 0.676386 |
Target: 5'- cGGGCU-CCCaCCGGAcgaaaaguggcuGCCCauGACUGCCGa -3' miRNA: 3'- -CCUGAuGGG-GGUCU------------CGGG--CUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 134698 | 0.68 | 0.695595 |
Target: 5'- aGGCUGacCCCCCGGAuGCCCcagaGGCgGCUGa -3' miRNA: 3'- cCUGAU--GGGGGUCU-CGGG----CUGgUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 38102 | 0.66 | 0.821203 |
Target: 5'- gGGACcaggccaagUACUCCCugcGGGGCCaguucccccugcUGACCACCa -3' miRNA: 3'- -CCUG---------AUGGGGG---UCUCGG------------GCUGGUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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