Results 101 - 120 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 124219 | 0.72 | 0.450396 |
Target: 5'- gGGACgugcaggGCCUgaUCGGGGCCCaGACCGCCc -3' miRNA: 3'- -CCUGa------UGGG--GGUCUCGGG-CUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 159294 | 0.72 | 0.45913 |
Target: 5'- gGGAC--CCCCgCAGGGUCCuaaaGGCCACCGc -3' miRNA: 3'- -CCUGauGGGG-GUCUCGGG----CUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 133301 | 0.71 | 0.504077 |
Target: 5'- gGGGCaggugACCCCCuGGGUCaCGugCACCu -3' miRNA: 3'- -CCUGa----UGGGGGuCUCGG-GCugGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 12507 | 0.71 | 0.504077 |
Target: 5'- cGGAggcCCCCCGGAGCCCacCCACUa -3' miRNA: 3'- -CCUgauGGGGGUCUCGGGcuGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 179214 | 0.71 | 0.504077 |
Target: 5'- cGGAggcCCCCCGGAGCCCacCCACUa -3' miRNA: 3'- -CCUgauGGGGGUCUCGGGcuGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 125822 | 0.7 | 0.541356 |
Target: 5'- aGGGCUacgcguccccgGCCCCCgAGAGCCUGcCCgaGCCc -3' miRNA: 3'- -CCUGA-----------UGGGGG-UCUCGGGCuGG--UGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 123335 | 0.7 | 0.549876 |
Target: 5'- uGACgggGCUCCUGGAggugcugGCCuCGGCCACCGa -3' miRNA: 3'- cCUGa--UGGGGGUCU-------CGG-GCUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 67674 | 0.7 | 0.560344 |
Target: 5'- aGcCUGCCUgCAGAGCCUGaACCcCCGg -3' miRNA: 3'- cCuGAUGGGgGUCUCGGGC-UGGuGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 12794 | 0.72 | 0.441754 |
Target: 5'- cGGAggGCCUCCGGAGCCCcAUgGCUGg -3' miRNA: 3'- -CCUgaUGGGGGUCUCGGGcUGgUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 157085 | 0.72 | 0.433207 |
Target: 5'- aGGACUGCCUcuCCAGGGcCCCGAUgAggcCCGg -3' miRNA: 3'- -CCUGAUGGG--GGUCUC-GGGCUGgU---GGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 115465 | 0.73 | 0.424756 |
Target: 5'- gGGGCaaguacGCCCCCcgGGAGaCCCGgGCCACCa -3' miRNA: 3'- -CCUGa-----UGGGGG--UCUC-GGGC-UGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 38102 | 0.66 | 0.821203 |
Target: 5'- gGGACcaggccaagUACUCCCugcGGGGCCaguucccccugcUGACCACCa -3' miRNA: 3'- -CCUG---------AUGGGGG---UCUCGG------------GCUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 27398 | 0.77 | 0.231993 |
Target: 5'- gGGGCUGCUgCCAGAcgcccgguGCCCGGCCACg- -3' miRNA: 3'- -CCUGAUGGgGGUCU--------CGGGCUGGUGgc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 162800 | 0.76 | 0.272076 |
Target: 5'- gGGGCUgACCCCCGGGGCCguGCUGCCa -3' miRNA: 3'- -CCUGA-UGGGGGUCUCGGgcUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 153758 | 0.74 | 0.345978 |
Target: 5'- uGGGCgagACCCCCcuGAGCCgccccagaaaGGCCACCGu -3' miRNA: 3'- -CCUGa--UGGGGGu-CUCGGg---------CUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 38477 | 0.74 | 0.360869 |
Target: 5'- cGGAcCUGCCCgCCAuGGCCCuGCCGCCc -3' miRNA: 3'- -CCU-GAUGGG-GGUcUCGGGcUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 76889 | 0.73 | 0.391966 |
Target: 5'- gGGGCUGCCCCCGGGGgUCuccguggggGACCugCu -3' miRNA: 3'- -CCUGAUGGGGGUCUCgGG---------CUGGugGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 160832 | 0.73 | 0.391966 |
Target: 5'- aGGGggGCCCgCCgAGGGUUCGACCACCa -3' miRNA: 3'- -CCUgaUGGG-GG-UCUCGGGCUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 46591 | 0.73 | 0.407336 |
Target: 5'- -uGCUGCCCCCAGAuauaaagaucaucGCCCccACCACCu -3' miRNA: 3'- ccUGAUGGGGGUCU-------------CGGGc-UGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 27765 | 0.73 | 0.408155 |
Target: 5'- uGGACacuucUGCCCCCAGGcucacGCCCGAgCugCa -3' miRNA: 3'- -CCUG-----AUGGGGGUCU-----CGGGCUgGugGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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