Results 21 - 40 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4007 | 5' | -60.3 | NC_001650.1 | + | 12724 | 0.7 | 0.568949 |
Target: 5'- aGGcCUACCCCUcGAGCCCcGGCCuggauuugcagagGCCu -3' miRNA: 3'- -CCuGAUGGGGGuCUCGGG-CUGG-------------UGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 123335 | 0.7 | 0.549876 |
Target: 5'- uGACgggGCUCCUGGAggugcugGCCuCGGCCACCGa -3' miRNA: 3'- cCUGa--UGGGGGUCU-------CGG-GCUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 157085 | 0.72 | 0.433207 |
Target: 5'- aGGACUGCCUcuCCAGGGcCCCGAUgAggcCCGg -3' miRNA: 3'- -CCUGAUGGG--GGUCUC-GGGCUGgU---GGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 153758 | 0.74 | 0.345978 |
Target: 5'- uGGGCgagACCCCCcuGAGCCgccccagaaaGGCCACCGu -3' miRNA: 3'- -CCUGa--UGGGGGu-CUCGGg---------CUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 36544 | 0.68 | 0.657045 |
Target: 5'- aGGuac-CCCCCAGAGCggcucCCGGCCGCg- -3' miRNA: 3'- -CCugauGGGGGUCUCG-----GGCUGGUGgc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 154454 | 0.69 | 0.6085 |
Target: 5'- cGGACgaggACCCagaguaCUGGGGCgCGGCCGCCu -3' miRNA: 3'- -CCUGa---UGGG------GGUCUCGgGCUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 179214 | 0.71 | 0.504077 |
Target: 5'- cGGAggcCCCCCGGAGCCCacCCACUa -3' miRNA: 3'- -CCUgauGGGGGUCUCGGGcuGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 162800 | 0.76 | 0.272076 |
Target: 5'- gGGGCUgACCCCCGGGGCCguGCUGCCa -3' miRNA: 3'- -CCUGA-UGGGGGUCUCGGgcUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 95498 | 0.69 | 0.598813 |
Target: 5'- gGGGCUuCCCCgaGGAGCCCccucCCGCCc -3' miRNA: 3'- -CCUGAuGGGGg-UCUCGGGcu--GGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 27398 | 0.77 | 0.231993 |
Target: 5'- gGGGCUGCUgCCAGAcgcccgguGCCCGGCCACg- -3' miRNA: 3'- -CCUGAUGGgGGUCU--------CGGGCUGGUGgc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 125822 | 0.7 | 0.541356 |
Target: 5'- aGGGCUacgcguccccgGCCCCCgAGAGCCUGcCCgaGCCc -3' miRNA: 3'- -CCUGA-----------UGGGGG-UCUCGGGCuGG--UGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 179431 | 0.7 | 0.568949 |
Target: 5'- aGGcCUACCCCUcGAGCCCcGGCCuggauuugcagagGCCu -3' miRNA: 3'- -CCuGAUGGGGGuCUCGGG-CUGG-------------UGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 159294 | 0.72 | 0.45913 |
Target: 5'- gGGAC--CCCCgCAGGGUCCuaaaGGCCACCGc -3' miRNA: 3'- -CCUGauGGGG-GUCUCGGG----CUGGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 12794 | 0.72 | 0.441754 |
Target: 5'- cGGAggGCCUCCGGAGCCCcAUgGCUGg -3' miRNA: 3'- -CCUgaUGGGGGUCUCGGGcUGgUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 46591 | 0.73 | 0.407336 |
Target: 5'- -uGCUGCCCCCAGAuauaaagaucaucGCCCccACCACCu -3' miRNA: 3'- ccUGAUGGGGGUCU-------------CGGGc-UGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 38477 | 0.74 | 0.360869 |
Target: 5'- cGGAcCUGCCCgCCAuGGCCCuGCCGCCc -3' miRNA: 3'- -CCU-GAUGGG-GGUcUCGGGcUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 112632 | 0.68 | 0.68505 |
Target: 5'- gGGGgUggACCUCCaguuugaGGAGCUCGugCGCCGa -3' miRNA: 3'- -CCUgA--UGGGGG-------UCUCGGGCugGUGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 55079 | 0.68 | 0.676386 |
Target: 5'- aGGGCcGCCCCCGuGucCUCGGCC-CCGg -3' miRNA: 3'- -CCUGaUGGGGGU-CucGGGCUGGuGGC- -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 11857 | 0.68 | 0.654136 |
Target: 5'- gGGGCUACCCaCUA-AGCCCcgggggucuaagggGGCCGCCc -3' miRNA: 3'- -CCUGAUGGG-GGUcUCGGG--------------CUGGUGGc -5' |
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4007 | 5' | -60.3 | NC_001650.1 | + | 112584 | 0.69 | 0.637632 |
Target: 5'- aGGCcacACCCCUGGcGCCCGGCgCGCCc -3' miRNA: 3'- cCUGa--UGGGGGUCuCGGGCUG-GUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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