miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 57210 0.68 0.657045
Target:  5'- -cACUGCCCCCcGGGCucCCGACcCGCgGa -3'
miRNA:   3'- ccUGAUGGGGGuCUCG--GGCUG-GUGgC- -5'
4007 5' -60.3 NC_001650.1 + 179214 0.71 0.504077
Target:  5'- cGGAggcCCCCCGGAGCCCacCCACUa -3'
miRNA:   3'- -CCUgauGGGGGUCUCGGGcuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 162800 0.76 0.272076
Target:  5'- gGGGCUgACCCCCGGGGCCguGCUGCCa -3'
miRNA:   3'- -CCUGA-UGGGGGUCUCGGgcUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 178564 0.68 0.654136
Target:  5'- gGGGCUACCCaCUA-AGCCCcgggggucuaagggGGCCGCCc -3'
miRNA:   3'- -CCUGAUGGG-GGUcUCGGG--------------CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 27398 0.77 0.231993
Target:  5'- gGGGCUGCUgCCAGAcgcccgguGCCCGGCCACg- -3'
miRNA:   3'- -CCUGAUGGgGGUCU--------CGGGCUGGUGgc -5'
4007 5' -60.3 NC_001650.1 + 136726 0.67 0.742647
Target:  5'- ----aACCCCCaccgugucAGAGacCCCGGCCACUGa -3'
miRNA:   3'- ccugaUGGGGG--------UCUC--GGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 38477 0.74 0.360869
Target:  5'- cGGAcCUGCCCgCCAuGGCCCuGCCGCCc -3'
miRNA:   3'- -CCU-GAUGGG-GGUcUCGGGcUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 59017 0.67 0.724032
Target:  5'- gGGGCcccgucGCCUCCGGGGCgggaucuuCUGGCCGCCu -3'
miRNA:   3'- -CCUGa-----UGGGGGUCUCG--------GGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 69777 0.67 0.721214
Target:  5'- aGGAa-ACCCCCaagcAGaAGCCCGccaaggcaaagcccGCCGCCGc -3'
miRNA:   3'- -CCUgaUGGGGG----UC-UCGGGC--------------UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 134100 0.68 0.702277
Target:  5'- aGGCcaUGCCCgCAGAuagagagaucaaucGCCCGcACCACCa -3'
miRNA:   3'- cCUG--AUGGGgGUCU--------------CGGGC-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 56162 0.68 0.695595
Target:  5'- ----aGCCCCUcGGGUCCG-CCACCGu -3'
miRNA:   3'- ccugaUGGGGGuCUCGGGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 112632 0.68 0.68505
Target:  5'- gGGGgUggACCUCCaguuugaGGAGCUCGugCGCCGa -3'
miRNA:   3'- -CCUgA--UGGGGG-------UCUCGGGCugGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 55079 0.68 0.676386
Target:  5'- aGGGCcGCCCCCGuGucCUCGGCC-CCGg -3'
miRNA:   3'- -CCUGaUGGGGGU-CucGGGCUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 12470 0.69 0.647344
Target:  5'- ----cACCCCCGGAGggaccCCCGuCCGCCu -3'
miRNA:   3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 95498 0.69 0.598813
Target:  5'- gGGGCUuCCCCgaGGAGCCCccucCCGCCc -3'
miRNA:   3'- -CCUGAuGGGGg-UCUCGGGcu--GGUGGc -5'
4007 5' -60.3 NC_001650.1 + 12724 0.7 0.568949
Target:  5'- aGGcCUACCCCUcGAGCCCcGGCCuggauuugcagagGCCu -3'
miRNA:   3'- -CCuGAUGGGGGuCUCGGG-CUGG-------------UGGc -5'
4007 5' -60.3 NC_001650.1 + 123335 0.7 0.549876
Target:  5'- uGACgggGCUCCUGGAggugcugGCCuCGGCCACCGa -3'
miRNA:   3'- cCUGa--UGGGGGUCU-------CGG-GCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 159294 0.72 0.45913
Target:  5'- gGGAC--CCCCgCAGGGUCCuaaaGGCCACCGc -3'
miRNA:   3'- -CCUGauGGGG-GUCUCGGG----CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 12794 0.72 0.441754
Target:  5'- cGGAggGCCUCCGGAGCCCcAUgGCUGg -3'
miRNA:   3'- -CCUgaUGGGGGUCUCGGGcUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 46591 0.73 0.407336
Target:  5'- -uGCUGCCCCCAGAuauaaagaucaucGCCCccACCACCu -3'
miRNA:   3'- ccUGAUGGGGGUCU-------------CGGGc-UGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.