miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 55079 0.68 0.676386
Target:  5'- aGGGCcGCCCCCGuGucCUCGGCC-CCGg -3'
miRNA:   3'- -CCUGaUGGGGGU-CucGGGCUGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 50342 0.68 0.68601
Target:  5'- gGGGCgGCCUCUAGAGgC-GACCGCUGc -3'
miRNA:   3'- -CCUGaUGGGGGUCUCgGgCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 76889 0.73 0.391966
Target:  5'- gGGGCUGCCCCCGGGGgUCuccguggggGACCugCu -3'
miRNA:   3'- -CCUGAUGGGGGUCUCgGG---------CUGGugGc -5'
4007 5' -60.3 NC_001650.1 + 27765 0.73 0.408155
Target:  5'- uGGACacuucUGCCCCCAGGcucacGCCCGAgCugCa -3'
miRNA:   3'- -CCUG-----AUGGGGGUCU-----CGGGCUgGugGc -5'
4007 5' -60.3 NC_001650.1 + 179501 0.72 0.441754
Target:  5'- cGGAggGCCUCCGGAGCCCcAUgGCUGg -3'
miRNA:   3'- -CCUgaUGGGGGUCUCGGGcUGgUGGC- -5'
4007 5' -60.3 NC_001650.1 + 133301 0.71 0.504077
Target:  5'- gGGGCaggugACCCCCuGGGUCaCGugCACCu -3'
miRNA:   3'- -CCUGa----UGGGGGuCUCGG-GCugGUGGc -5'
4007 5' -60.3 NC_001650.1 + 67674 0.7 0.560344
Target:  5'- aGcCUGCCUgCAGAGCCUGaACCcCCGg -3'
miRNA:   3'- cCuGAUGGGgGUCUCGGGC-UGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 179431 0.7 0.568949
Target:  5'- aGGcCUACCCCUcGAGCCCcGGCCuggauuugcagagGCCu -3'
miRNA:   3'- -CCuGAUGGGGGuCUCGGG-CUGG-------------UGGc -5'
4007 5' -60.3 NC_001650.1 + 154454 0.69 0.6085
Target:  5'- cGGACgaggACCCagaguaCUGGGGCgCGGCCGCCu -3'
miRNA:   3'- -CCUGa---UGGG------GGUCUCGgGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 179177 0.69 0.647344
Target:  5'- ----cACCCCCGGAGggaccCCCGuCCGCCu -3'
miRNA:   3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 135284 0.66 0.79615
Target:  5'- cGGGCa--CCUCAGAGgUguUGACCACCGu -3'
miRNA:   3'- -CCUGaugGGGGUCUCgG--GCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 125384 0.66 0.787522
Target:  5'- gGGGCUcaucugccuCUCCCGG-GCCCGAUC-CCa -3'
miRNA:   3'- -CCUGAu--------GGGGGUCuCGGGCUGGuGGc -5'
4007 5' -60.3 NC_001650.1 + 161538 0.68 0.695595
Target:  5'- uGGACgGCCgCCAGgauggaGGCCa-GCCGCCGg -3'
miRNA:   3'- -CCUGaUGGgGGUC------UCGGgcUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 107181 0.68 0.705132
Target:  5'- cGGGCU-CCCCCGaGGCCCagcGCgGCCu -3'
miRNA:   3'- -CCUGAuGGGGGUcUCGGGc--UGgUGGc -5'
4007 5' -60.3 NC_001650.1 + 59017 0.67 0.724032
Target:  5'- gGGGCcccgucGCCUCCGGGGCgggaucuuCUGGCCGCCu -3'
miRNA:   3'- -CCUGa-----UGGGGGUCUCG--------GGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 136726 0.67 0.742647
Target:  5'- ----aACCCCCaccgugucAGAGacCCCGGCCACUGa -3'
miRNA:   3'- ccugaUGGGGG--------UCUC--GGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 54333 0.67 0.760009
Target:  5'- uGGCUcauuuuaGCCUCCAcGGCCuCGGCCuGCCGg -3'
miRNA:   3'- cCUGA-------UGGGGGUcUCGG-GCUGG-UGGC- -5'
4007 5' -60.3 NC_001650.1 + 166147 0.67 0.760913
Target:  5'- ----aGCCCCCAGAGugacaCCCGcCCACUc -3'
miRNA:   3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 181161 0.66 0.769896
Target:  5'- gGGAg-GCCUCCGG-GCCCGGCgACg- -3'
miRNA:   3'- -CCUgaUGGGGGUCuCGGGCUGgUGgc -5'
4007 5' -60.3 NC_001650.1 + 62616 0.66 0.778768
Target:  5'- uGGACggGCCaCCCgAGGGCgCUGcccuCCGCCGc -3'
miRNA:   3'- -CCUGa-UGG-GGG-UCUCG-GGCu---GGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.