miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4007 5' -60.3 NC_001650.1 + 59017 0.67 0.724032
Target:  5'- gGGGCcccgucGCCUCCGGGGCgggaucuuCUGGCCGCCu -3'
miRNA:   3'- -CCUGa-----UGGGGGUCUCG--------GGCUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 136726 0.67 0.742647
Target:  5'- ----aACCCCCaccgugucAGAGacCCCGGCCACUGa -3'
miRNA:   3'- ccugaUGGGGG--------UCUC--GGGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 54333 0.67 0.760009
Target:  5'- uGGCUcauuuuaGCCUCCAcGGCCuCGGCCuGCCGg -3'
miRNA:   3'- cCUGA-------UGGGGGUcUCGG-GCUGG-UGGC- -5'
4007 5' -60.3 NC_001650.1 + 166147 0.67 0.760913
Target:  5'- ----aGCCCCCAGAGugacaCCCGcCCACUc -3'
miRNA:   3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 12470 0.69 0.647344
Target:  5'- ----cACCCCCGGAGggaccCCCGuCCGCCu -3'
miRNA:   3'- ccugaUGGGGGUCUC-----GGGCuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 179214 0.71 0.504077
Target:  5'- cGGAggcCCCCCGGAGCCCacCCACUa -3'
miRNA:   3'- -CCUgauGGGGGUCUCGGGcuGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 114507 0.69 0.598813
Target:  5'- aGACUGCuCCUCGGGGCCUGcugguACC-CCGu -3'
miRNA:   3'- cCUGAUG-GGGGUCUCGGGC-----UGGuGGC- -5'
4007 5' -60.3 NC_001650.1 + 46591 0.73 0.407336
Target:  5'- -uGCUGCCCCCAGAuauaaagaucaucGCCCccACCACCu -3'
miRNA:   3'- ccUGAUGGGGGUCU-------------CGGGc-UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 157085 0.72 0.433207
Target:  5'- aGGACUGCCUcuCCAGGGcCCCGAUgAggcCCGg -3'
miRNA:   3'- -CCUGAUGGG--GGUCUC-GGGCUGgU---GGC- -5'
4007 5' -60.3 NC_001650.1 + 12724 0.7 0.568949
Target:  5'- aGGcCUACCCCUcGAGCCCcGGCCuggauuugcagagGCCu -3'
miRNA:   3'- -CCuGAUGGGGGuCUCGGG-CUGG-------------UGGc -5'
4007 5' -60.3 NC_001650.1 + 159294 0.72 0.45913
Target:  5'- gGGAC--CCCCgCAGGGUCCuaaaGGCCACCGc -3'
miRNA:   3'- -CCUGauGGGG-GUCUCGGG----CUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 109378 0.69 0.637632
Target:  5'- cGGACggGCCCCUGGAcaCCGgcaucuACCACCGg -3'
miRNA:   3'- -CCUGa-UGGGGGUCUcgGGC------UGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 45345 0.68 0.657045
Target:  5'- -aGCUcGCCCCCGGAGCUCGGuucccaaacCCAacCCGg -3'
miRNA:   3'- ccUGA-UGGGGGUCUCGGGCU---------GGU--GGC- -5'
4007 5' -60.3 NC_001650.1 + 174646 0.68 0.657045
Target:  5'- uGGACU-CCCCCAuuGGGCCCccguguguaAUCACCa -3'
miRNA:   3'- -CCUGAuGGGGGU--CUCGGGc--------UGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 1074 0.66 0.769896
Target:  5'- uGGGCccACCCCCGG-GCCC--CCAUUGg -3'
miRNA:   3'- -CCUGa-UGGGGGUCuCGGGcuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 164870 0.67 0.751827
Target:  5'- aGGAUgggagGCCCugaCUAGAGCgCG-CCGCCGc -3'
miRNA:   3'- -CCUGa----UGGG---GGUCUCGgGCuGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 131748 0.67 0.760913
Target:  5'- aGGACauguacuuCCCCCGGAgcagGCCCGAgguggaCCACUu -3'
miRNA:   3'- -CCUGau------GGGGGUCU----CGGGCU------GGUGGc -5'
4007 5' -60.3 NC_001650.1 + 131810 0.66 0.769002
Target:  5'- aGGGCcuuCCUguucaggCCGGGGCgguggCCGGCCGCCGa -3'
miRNA:   3'- -CCUGau-GGG-------GGUCUCG-----GGCUGGUGGC- -5'
4007 5' -60.3 NC_001650.1 + 93396 0.66 0.769896
Target:  5'- uGGGC-ACCCCCA---CCCugugGACCACCa -3'
miRNA:   3'- -CCUGaUGGGGGUcucGGG----CUGGUGGc -5'
4007 5' -60.3 NC_001650.1 + 45172 0.71 0.531942
Target:  5'- aGGCU-CCCCCGGAGCCgGguACCcCCa -3'
miRNA:   3'- cCUGAuGGGGGUCUCGGgC--UGGuGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.