Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 3603 | 0.68 | 0.849888 |
Target: 5'- -cCAGGggggCGCCUcUCUCCGGGGGa- -3' miRNA: 3'- uaGUUUaa--GUGGGcAGAGGCCCCCgu -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 16856 | 0.71 | 0.693667 |
Target: 5'- --uGAggUCACCCGUCUCC--GGGCAg -3' miRNA: 3'- uagUUuaAGUGGGCAGAGGccCCCGU- -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 22576 | 0.66 | 0.923727 |
Target: 5'- ------gUCGCCCGUC-CgGGGcGGCGg -3' miRNA: 3'- uaguuuaAGUGGGCAGaGgCCC-CCGU- -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 30308 | 0.68 | 0.85769 |
Target: 5'- gGUCAGggUC-CCCuUCUaCGGGGGCGc -3' miRNA: 3'- -UAGUUuaAGuGGGcAGAgGCCCCCGU- -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 31073 | 0.66 | 0.938999 |
Target: 5'- cUCGAG-UC-CCUGUUUUgCGGGGGCGu -3' miRNA: 3'- uAGUUUaAGuGGGCAGAG-GCCCCCGU- -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 46487 | 0.67 | 0.879853 |
Target: 5'- gGUCAgaAGUUCACCC-UCUCCccggcgucGGGGCc -3' miRNA: 3'- -UAGU--UUAAGUGGGcAGAGGc-------CCCCGu -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 52451 | 0.69 | 0.816788 |
Target: 5'- uUCAAGUggucCACCuCGggccugCUCCGGGGGa- -3' miRNA: 3'- uAGUUUAa---GUGG-GCa-----GAGGCCCCCgu -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 52589 | 0.71 | 0.683585 |
Target: 5'- cGUCGGcUUCGCCCGggagCUCUgggauGGGGGCc -3' miRNA: 3'- -UAGUUuAAGUGGGCa---GAGG-----CCCCCGu -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 52931 | 0.67 | 0.906317 |
Target: 5'- aAUCAucccggCGCCCGgaggggCCGGGGGUu -3' miRNA: 3'- -UAGUuuaa--GUGGGCaga---GGCCCCCGu -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 59740 | 0.71 | 0.723573 |
Target: 5'- cGUCGAGgg-GCCCGUggcCcCCGGGGGCGa -3' miRNA: 3'- -UAGUUUaagUGGGCA---GaGGCCCCCGU- -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 68740 | 0.71 | 0.71367 |
Target: 5'- cGUCAuggUgGCCCGggUCUCCcgGGGGGCGu -3' miRNA: 3'- -UAGUuuaAgUGGGC--AGAGG--CCCCCGU- -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 75051 | 0.67 | 0.89354 |
Target: 5'- cUCGucc-CACUCGgg-CCGGGGGCAg -3' miRNA: 3'- uAGUuuaaGUGGGCagaGGCCCCCGU- -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 78943 | 0.67 | 0.89354 |
Target: 5'- -----uUUUACCUGUCccUCCuGGGGGCGc -3' miRNA: 3'- uaguuuAAGUGGGCAG--AGG-CCCCCGU- -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 109299 | 0.76 | 0.446295 |
Target: 5'- uGUUGAAaUCuccCCCGUCgUCCGGGGGCGc -3' miRNA: 3'- -UAGUUUaAGu--GGGCAG-AGGCCCCCGU- -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 121391 | 0.66 | 0.938999 |
Target: 5'- ------aUCGCCCcgg-CCGGGGGCGc -3' miRNA: 3'- uaguuuaAGUGGGcagaGGCCCCCGU- -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 123037 | 0.71 | 0.723573 |
Target: 5'- gGUCAGGggCACCCucUCUCUuGGGGCAa -3' miRNA: 3'- -UAGUUUaaGUGGGc-AGAGGcCCCCGU- -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 125014 | 0.68 | 0.849888 |
Target: 5'- cUCGA--UCGCCagaggggGUC-CCGGGGGCGg -3' miRNA: 3'- uAGUUuaAGUGGg------CAGaGGCCCCCGU- -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 130973 | 0.66 | 0.923727 |
Target: 5'- -cCAGAg--GCCCGUCUUCGaGGcGGCGc -3' miRNA: 3'- uaGUUUaagUGGGCAGAGGC-CC-CCGU- -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 131341 | 0.66 | 0.91816 |
Target: 5'- -gCGGGUgggGCCCGg--CCGGGGGCc -3' miRNA: 3'- uaGUUUAag-UGGGCagaGGCCCCCGu -5' |
|||||||
4009 | 3' | -55.7 | NC_001650.1 | + | 134817 | 1.07 | 0.004982 |
Target: 5'- uAUCAAAUUCACCCGUCUCCGGGGGCAg -3' miRNA: 3'- -UAGUUUAAGUGGGCAGAGGCCCCCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home