miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4009 5' -52.5 NC_001650.1 + 62160 0.66 0.989419
Target:  5'- gGGCGCCUgAuguGggC-CAGcCCCGCc -3'
miRNA:   3'- -UCGCGGAgUuuuCuaGaGUCuGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 41683 0.66 0.989419
Target:  5'- uGUGUaUCAGAaaAGAaagcugccuUCUCAGACuCCGCu -3'
miRNA:   3'- uCGCGgAGUUU--UCU---------AGAGUCUG-GGCG- -5'
4009 5' -52.5 NC_001650.1 + 142454 0.66 0.989419
Target:  5'- cAGCuGCacuuuCUCAuaaAGAGGUgcUUCAGGCCCGUg -3'
miRNA:   3'- -UCG-CG-----GAGU---UUUCUA--GAGUCUGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 24379 0.66 0.989419
Target:  5'- aAGCGgUUCAGu-GGUCcCAGACCCu- -3'
miRNA:   3'- -UCGCgGAGUUuuCUAGaGUCUGGGcg -5'
4009 5' -52.5 NC_001650.1 + 29222 0.66 0.989282
Target:  5'- cGUGCCcCGAAGGGUggccgggCUCAGGaccucCCCGUg -3'
miRNA:   3'- uCGCGGaGUUUUCUA-------GAGUCU-----GGGCG- -5'
4009 5' -52.5 NC_001650.1 + 25035 0.66 0.98814
Target:  5'- aGGCgGCCUCGAuguucuacGGGAgcgacguggccagCGGGCCCGCc -3'
miRNA:   3'- -UCG-CGGAGUU--------UUCUaga----------GUCUGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 122936 0.66 0.987991
Target:  5'- -aCGCC-CAcgGGGUCcuggCGGACCuCGCg -3'
miRNA:   3'- ucGCGGaGUuuUCUAGa---GUCUGG-GCG- -5'
4009 5' -52.5 NC_001650.1 + 118818 0.66 0.987991
Target:  5'- gAGCauGCCcCGcGAGAUCaggcgcucguacUCGGGCCCGUu -3'
miRNA:   3'- -UCG--CGGaGUuUUCUAG------------AGUCUGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 24653 0.66 0.987991
Target:  5'- cGGCGuggauaacaCCUCGGAcaccaAGAcCUCGGACgCGCu -3'
miRNA:   3'- -UCGC---------GGAGUUU-----UCUaGAGUCUGgGCG- -5'
4009 5' -52.5 NC_001650.1 + 52659 0.66 0.986419
Target:  5'- --gGCCUCGGGGuuUCUCcGcCCCGCg -3'
miRNA:   3'- ucgCGGAGUUUUcuAGAGuCuGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 85941 0.66 0.986419
Target:  5'- gGGUuCUUUAGaAAGAggaaccaCUCGGACCCGCu -3'
miRNA:   3'- -UCGcGGAGUU-UUCUa------GAGUCUGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 84156 0.66 0.984693
Target:  5'- cGCGCCUCGGGGGucaCUUuggagcugguGGACUgGCu -3'
miRNA:   3'- uCGCGGAGUUUUCua-GAG----------UCUGGgCG- -5'
4009 5' -52.5 NC_001650.1 + 72766 0.66 0.984693
Target:  5'- cGCgGCCUUugccaucucuGAGAGGaa-CAGGCCCGCg -3'
miRNA:   3'- uCG-CGGAG----------UUUUCUagaGUCUGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 56451 0.66 0.984693
Target:  5'- --gGCCUUGGAGGGgugggC-CGGGCCCGUg -3'
miRNA:   3'- ucgCGGAGUUUUCUa----GaGUCUGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 157558 0.66 0.984512
Target:  5'- cAGCGCCUCcuguggcagcuugGAGAGGUa-CAGcACCgCGCc -3'
miRNA:   3'- -UCGCGGAG-------------UUUUCUAgaGUC-UGG-GCG- -5'
4009 5' -52.5 NC_001650.1 + 109458 0.66 0.982805
Target:  5'- uGCgGCCUgGAGAGGcugCUCAGGCUCu- -3'
miRNA:   3'- uCG-CGGAgUUUUCUa--GAGUCUGGGcg -5'
4009 5' -52.5 NC_001650.1 + 100556 0.66 0.982805
Target:  5'- cGCGaUCUCuauGAGGUCgCAGACCaccaGCu -3'
miRNA:   3'- uCGC-GGAGuu-UUCUAGaGUCUGGg---CG- -5'
4009 5' -52.5 NC_001650.1 + 127965 0.66 0.982408
Target:  5'- aGGUGCCUgcccgccAUCUacaccCAGACCCGCg -3'
miRNA:   3'- -UCGCGGAguuuuc-UAGA-----GUCUGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 128850 0.67 0.980747
Target:  5'- uGCGUCUCAAgGAGAggCUCAGggaGCUgGCc -3'
miRNA:   3'- uCGCGGAGUU-UUCUa-GAGUC---UGGgCG- -5'
4009 5' -52.5 NC_001650.1 + 79687 0.67 0.980747
Target:  5'- uGCGCCU----GGGUCa-GGGCCUGCg -3'
miRNA:   3'- uCGCGGAguuuUCUAGagUCUGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.