miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4009 5' -52.5 NC_001650.1 + 18779 0.72 0.824939
Target:  5'- gAGCGCuCUCGAGAuGAUCauccUCGGGCuuGUa -3'
miRNA:   3'- -UCGCG-GAGUUUU-CUAG----AGUCUGggCG- -5'
4009 5' -52.5 NC_001650.1 + 22544 0.68 0.949151
Target:  5'- cGCGCCUCcauc-AUCUCccccaAGGCCUGCc -3'
miRNA:   3'- uCGCGGAGuuuucUAGAG-----UCUGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 23311 0.74 0.721293
Target:  5'- uGCGCCUCGGgcAGGGUCgcgcagCAGugCgGCg -3'
miRNA:   3'- uCGCGGAGUU--UUCUAGa-----GUCugGgCG- -5'
4009 5' -52.5 NC_001650.1 + 23742 0.67 0.973469
Target:  5'- cGCGuCCUCGcggcgcgcGGGGggCggAGACCCGCc -3'
miRNA:   3'- uCGC-GGAGU--------UUUCuaGagUCUGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 24379 0.66 0.989419
Target:  5'- aAGCGgUUCAGu-GGUCcCAGACCCu- -3'
miRNA:   3'- -UCGCgGAGUUuuCUAGaGUCUGGGcg -5'
4009 5' -52.5 NC_001650.1 + 24653 0.66 0.987991
Target:  5'- cGGCGuggauaacaCCUCGGAcaccaAGAcCUCGGACgCGCu -3'
miRNA:   3'- -UCGC---------GGAGUUU-----UCUaGAGUCUGgGCG- -5'
4009 5' -52.5 NC_001650.1 + 25035 0.66 0.98814
Target:  5'- aGGCgGCCUCGAuguucuacGGGAgcgacguggccagCGGGCCCGCc -3'
miRNA:   3'- -UCG-CGGAGUU--------UUCUaga----------GUCUGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 26277 0.75 0.669234
Target:  5'- cGGUGCCUCAAccacucgGGGGUCccUguGACCUGCg -3'
miRNA:   3'- -UCGCGGAGUU-------UUCUAG--AguCUGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 26859 0.71 0.87307
Target:  5'- uGCGCCUUu-AGGGUCcugggcaGGACCUGCg -3'
miRNA:   3'- uCGCGGAGuuUUCUAGag-----UCUGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 28759 0.71 0.865566
Target:  5'- uGCGCCUUc-GGGGUCUuugaCGGugCCGCc -3'
miRNA:   3'- uCGCGGAGuuUUCUAGA----GUCugGGCG- -5'
4009 5' -52.5 NC_001650.1 + 29222 0.66 0.989282
Target:  5'- cGUGCCcCGAAGGGUggccgggCUCAGGaccucCCCGUg -3'
miRNA:   3'- uCGCGGaGUUUUCUA-------GAGUCU-----GGGCG- -5'
4009 5' -52.5 NC_001650.1 + 29583 0.68 0.96438
Target:  5'- gAGCGagaggCUgCAGAGGcUCUCGGACCUGg -3'
miRNA:   3'- -UCGCg----GA-GUUUUCuAGAGUCUGGGCg -5'
4009 5' -52.5 NC_001650.1 + 29817 0.71 0.87307
Target:  5'- cGCGCCUgGAGAGucaCUUAGAgCCGg -3'
miRNA:   3'- uCGCGGAgUUUUCua-GAGUCUgGGCg -5'
4009 5' -52.5 NC_001650.1 + 30462 0.73 0.798338
Target:  5'- gGGCGgCUCAgGGGGGUCUCGcccaucccGCCCGCg -3'
miRNA:   3'- -UCGCgGAGU-UUUCUAGAGUc-------UGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 31306 0.69 0.940121
Target:  5'- gGGCGCUUCAugcgaccccAGGGAcgugcUCUCuGACgCGCg -3'
miRNA:   3'- -UCGCGGAGU---------UUUCU-----AGAGuCUGgGCG- -5'
4009 5' -52.5 NC_001650.1 + 35958 0.68 0.957227
Target:  5'- aGGCGCUUUAGcu--UCUUAGGCuuGCg -3'
miRNA:   3'- -UCGCGGAGUUuucuAGAGUCUGggCG- -5'
4009 5' -52.5 NC_001650.1 + 41165 0.72 0.824939
Target:  5'- gAGCGCCUCGGcgcc-CUCcgcguGGCCCGCg -3'
miRNA:   3'- -UCGCGGAGUUuucuaGAGu----CUGGGCG- -5'
4009 5' -52.5 NC_001650.1 + 41496 0.67 0.973469
Target:  5'- gGGCGCCU-----GGUCUCGGccGCgCCGCc -3'
miRNA:   3'- -UCGCGGAguuuuCUAGAGUC--UG-GGCG- -5'
4009 5' -52.5 NC_001650.1 + 41683 0.66 0.989419
Target:  5'- uGUGUaUCAGAaaAGAaagcugccuUCUCAGACuCCGCu -3'
miRNA:   3'- uCGCGgAGUUU--UCU---------AGAGUCUG-GGCG- -5'
4009 5' -52.5 NC_001650.1 + 50640 0.69 0.944756
Target:  5'- uGCGCCcccUCGAGGGG-C-CGGuGCCCGCg -3'
miRNA:   3'- uCGCGG---AGUUUUCUaGaGUC-UGGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.