miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
401 3' -61.3 AC_000011.1 + 17312 0.66 0.330601
Target:  5'- uGCugAUGG-CGcGCCGCCgCCGg-- -3'
miRNA:   3'- gCGugUGCCuGCuCGGCGGgGGCaug -5'
401 3' -61.3 AC_000011.1 + 10461 0.66 0.322756
Target:  5'- gGC-CACGGAguCGAGCCGCUgaCCGc-- -3'
miRNA:   3'- gCGuGUGCCU--GCUCGGCGGg-GGCaug -5'
401 3' -61.3 AC_000011.1 + 13614 0.66 0.322756
Target:  5'- uCGCAgGgGGccACGAGCCggggcagcGCCgCCCGUAa -3'
miRNA:   3'- -GCGUgUgCC--UGCUCGG--------CGG-GGGCAUg -5'
401 3' -61.3 AC_000011.1 + 4075 0.66 0.322756
Target:  5'- gGUACAUGGGCauGAGcCCGUCCCgGg-- -3'
miRNA:   3'- gCGUGUGCCUG--CUC-GGCGGGGgCaug -5'
401 3' -61.3 AC_000011.1 + 16657 0.66 0.315051
Target:  5'- aGCuGCAUGGugGGGUacagauccuCGCCCUCGcGCu -3'
miRNA:   3'- gCG-UGUGCCugCUCG---------GCGGGGGCaUG- -5'
401 3' -61.3 AC_000011.1 + 15858 0.66 0.315051
Target:  5'- gCGCGCAUGG-CgGGGgUGCUCCgGUGCc -3'
miRNA:   3'- -GCGUGUGCCuG-CUCgGCGGGGgCAUG- -5'
401 3' -61.3 AC_000011.1 + 8495 0.66 0.307485
Target:  5'- cCGCuucuaacCAUGGAaGAGgcaCCGCCCCCGUcGCc -3'
miRNA:   3'- -GCGu------GUGCCUgCUC---GGCGGGGGCA-UG- -5'
401 3' -61.3 AC_000011.1 + 16012 0.66 0.30006
Target:  5'- cCGCGgGCGGgacaugcugGCGAuggccgcuGCCGCCgCCGUGg -3'
miRNA:   3'- -GCGUgUGCC---------UGCU--------CGGCGGgGGCAUg -5'
401 3' -61.3 AC_000011.1 + 6525 0.66 0.30006
Target:  5'- uCGCGCACGG-CcAGCgCGCgCUCGUAg -3'
miRNA:   3'- -GCGUGUGCCuGcUCG-GCGgGGGCAUg -5'
401 3' -61.3 AC_000011.1 + 21522 0.67 0.292773
Target:  5'- cCGCAgGCGGcCGAGCgCGgaCCCUGcACg -3'
miRNA:   3'- -GCGUgUGCCuGCUCG-GCg-GGGGCaUG- -5'
401 3' -61.3 AC_000011.1 + 8544 0.67 0.292773
Target:  5'- nGC-CucCGGGCcccGAGCCGCCCCUGc-- -3'
miRNA:   3'- gCGuGu-GCCUG---CUCGGCGGGGGCaug -5'
401 3' -61.3 AC_000011.1 + 11275 0.67 0.271745
Target:  5'- uGCGCGCGcGCgGGGCUGaUCCCCGUcaGCu -3'
miRNA:   3'- gCGUGUGCcUG-CUCGGC-GGGGGCA--UG- -5'
401 3' -61.3 AC_000011.1 + 24698 0.67 0.265011
Target:  5'- aCGCAguCGCGGAUGuAGUCGCgccgggccuCCCCGcGCa -3'
miRNA:   3'- -GCGU--GUGCCUGC-UCGGCG---------GGGGCaUG- -5'
401 3' -61.3 AC_000011.1 + 4791 0.67 0.265011
Target:  5'- cCGCAgcCGGugGGGCCGUagaugaCCCCGa-- -3'
miRNA:   3'- -GCGUguGCCugCUCGGCG------GGGGCaug -5'
401 3' -61.3 AC_000011.1 + 26797 0.67 0.258412
Target:  5'- aCGaCACAgGGugGcGCCGCCCgCCa--- -3'
miRNA:   3'- -GC-GUGUgCCugCuCGGCGGG-GGcaug -5'
401 3' -61.3 AC_000011.1 + 28332 0.68 0.251948
Target:  5'- gGUGCGCGGG-GAGCCGUCagcaCCGgggACa -3'
miRNA:   3'- gCGUGUGCCUgCUCGGCGGg---GGCa--UG- -5'
401 3' -61.3 AC_000011.1 + 26734 0.68 0.233354
Target:  5'- aGCugGCGGGCGGcGCCa-CCCUGUGu -3'
miRNA:   3'- gCGugUGCCUGCU-CGGcgGGGGCAUg -5'
401 3' -61.3 AC_000011.1 + 13691 0.68 0.233354
Target:  5'- gGCGuuUACGGGCGGcGCUGCCCCggcuCGUGg -3'
miRNA:   3'- gCGU--GUGCCUGCU-CGGCGGGG----GCAUg -5'
401 3' -61.3 AC_000011.1 + 17961 0.68 0.221609
Target:  5'- uCGUACGgGGGCG-GCuCGUCCgUGUGCg -3'
miRNA:   3'- -GCGUGUgCCUGCuCG-GCGGGgGCAUG- -5'
401 3' -61.3 AC_000011.1 + 20039 0.69 0.210372
Target:  5'- uGCGCACGGACGGG--GCCUCCa--- -3'
miRNA:   3'- gCGUGUGCCUGCUCggCGGGGGcaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.