miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4010 3' -57.7 NC_001650.1 + 41520 0.66 0.87919
Target:  5'- -cCGCCGCCGCCCgcucgCCgcuuaUCGGcCGGcGCg -3'
miRNA:   3'- guGUGGCGGUGGGa----GG-----AGUC-GUCuUG- -5'
4010 3' -57.7 NC_001650.1 + 105170 0.66 0.87919
Target:  5'- --gGCCGCUAUCCUCUcCAG-AGGGCu -3'
miRNA:   3'- gugUGGCGGUGGGAGGaGUCgUCUUG- -5'
4010 3' -57.7 NC_001650.1 + 12263 0.66 0.876372
Target:  5'- --gGCCGCCugCCaggcauggggaaCUCAGCAGAc- -3'
miRNA:   3'- gugUGGCGGugGGag----------GAGUCGUCUug -5'
4010 3' -57.7 NC_001650.1 + 178970 0.66 0.876372
Target:  5'- --gGCCGCCugCCaggcauggggaaCUCAGCAGAc- -3'
miRNA:   3'- gugUGGCGGugGGag----------GAGUCGUCUug -5'
4010 3' -57.7 NC_001650.1 + 120855 0.66 0.872082
Target:  5'- gCugGCUGgCGCUCUCCUacgCGGCGGcGCu -3'
miRNA:   3'- -GugUGGCgGUGGGAGGA---GUCGUCuUG- -5'
4010 3' -57.7 NC_001650.1 + 114456 0.66 0.872082
Target:  5'- gACGCCGCCcugagGCCCgagCCUaucuucuacacCuGCAGGGCc -3'
miRNA:   3'- gUGUGGCGG-----UGGGa--GGA-----------GuCGUCUUG- -5'
4010 3' -57.7 NC_001650.1 + 25972 0.66 0.872082
Target:  5'- cCACgGCCGCCAgCCC-CCUggugaGGCAGuACa -3'
miRNA:   3'- -GUG-UGGCGGU-GGGaGGAg----UCGUCuUG- -5'
4010 3' -57.7 NC_001650.1 + 56389 0.66 0.872082
Target:  5'- --aACCggGCCGCCCUCgCUCuuccccgcuaGGCAGAGa -3'
miRNA:   3'- gugUGG--CGGUGGGAG-GAG----------UCGUCUUg -5'
4010 3' -57.7 NC_001650.1 + 56048 0.66 0.864766
Target:  5'- uCGCgGCCaCCGCCUcCCUCAGCGcGGCg -3'
miRNA:   3'- -GUG-UGGcGGUGGGaGGAGUCGUcUUG- -5'
4010 3' -57.7 NC_001650.1 + 164698 0.66 0.864766
Target:  5'- uCGCGCCGCUgcacagacagaaGCUCUCCagGGCcgccuGAGCg -3'
miRNA:   3'- -GUGUGGCGG------------UGGGAGGagUCGu----CUUG- -5'
4010 3' -57.7 NC_001650.1 + 156617 0.66 0.864766
Target:  5'- gCAgGCCaucaCCGCCCUCUcCAGCuGGGCc -3'
miRNA:   3'- -GUgUGGc---GGUGGGAGGaGUCGuCUUG- -5'
4010 3' -57.7 NC_001650.1 + 98105 0.66 0.864766
Target:  5'- gCGgAUgGCUAaacUCCUCCUCGGCGGAc- -3'
miRNA:   3'- -GUgUGgCGGU---GGGAGGAGUCGUCUug -5'
4010 3' -57.7 NC_001650.1 + 55479 0.66 0.864766
Target:  5'- aCACGgCGCCcCCCUCCccUC-GCuGGGACg -3'
miRNA:   3'- -GUGUgGCGGuGGGAGG--AGuCG-UCUUG- -5'
4010 3' -57.7 NC_001650.1 + 63157 0.66 0.864766
Target:  5'- cCGCGCCGCgGCguCC-CCg-GGCAGGGCg -3'
miRNA:   3'- -GUGUGGCGgUG--GGaGGagUCGUCUUG- -5'
4010 3' -57.7 NC_001650.1 + 117289 0.66 0.857246
Target:  5'- gACGCCGCCAUCCgcgCCcCGGCcccauGCu -3'
miRNA:   3'- gUGUGGCGGUGGGa--GGaGUCGucu--UG- -5'
4010 3' -57.7 NC_001650.1 + 3878 0.66 0.857246
Target:  5'- uCugGCaGCguCCC-CCUCAGCAGGcaGCg -3'
miRNA:   3'- -GugUGgCGguGGGaGGAGUCGUCU--UG- -5'
4010 3' -57.7 NC_001650.1 + 27604 0.66 0.857246
Target:  5'- uGC-CCGCCucgGCCCUCUcgGGCAGcAACu -3'
miRNA:   3'- gUGuGGCGG---UGGGAGGagUCGUC-UUG- -5'
4010 3' -57.7 NC_001650.1 + 50448 0.66 0.857246
Target:  5'- gCACGCUGCCuuauuugccaaACCUcaagaacaUCCUC-GCGGGGCg -3'
miRNA:   3'- -GUGUGGCGG-----------UGGG--------AGGAGuCGUCUUG- -5'
4010 3' -57.7 NC_001650.1 + 119435 0.66 0.857246
Target:  5'- cCACAUCGCuggCACCCUUCcCGGUccugaAGAACu -3'
miRNA:   3'- -GUGUGGCG---GUGGGAGGaGUCG-----UCUUG- -5'
4010 3' -57.7 NC_001650.1 + 145768 0.66 0.857246
Target:  5'- uCACAggCGCC-CCCUCCcgguuGCGGAGCg -3'
miRNA:   3'- -GUGUg-GCGGuGGGAGGagu--CGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.