miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4013 3' -60.6 NC_001650.1 + 49465 0.66 0.797081
Target:  5'- gGCaucAGggGG-CGCCGCCuCCACa- -3'
miRNA:   3'- gCGgu-UCuuCCaGCGGCGGcGGUGgc -5'
4013 3' -60.6 NC_001650.1 + 155081 0.66 0.797081
Target:  5'- uGCCGucccuGGAGcacaGCC-CCGCCACCGu -3'
miRNA:   3'- gCGGUu----CUUCcag-CGGcGGCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 38486 0.66 0.797081
Target:  5'- cCGCCAu---GGcccUGCCGCCcuGCCACCu -3'
miRNA:   3'- -GCGGUucuuCCa--GCGGCGG--CGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 65238 0.66 0.791911
Target:  5'- aCGUCAAGGAGG-CGaCCgacaggaucuuguggGCgGCCGCUGa -3'
miRNA:   3'- -GCGGUUCUUCCaGC-GG---------------CGgCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 157288 0.66 0.788438
Target:  5'- gCGCCuGGggGGcaccUCcCCGCCcCCGCCc -3'
miRNA:   3'- -GCGGuUCuuCC----AGcGGCGGcGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 122734 0.66 0.788438
Target:  5'- gGCCAGGAaaAGaUgGCCGCCagcGUCGCCu -3'
miRNA:   3'- gCGGUUCU--UCcAgCGGCGG---CGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 107584 0.66 0.788438
Target:  5'- gGCCGAGAAGG-CGCgCGCCuuCgagACCu -3'
miRNA:   3'- gCGGUUCUUCCaGCG-GCGGcgG---UGGc -5'
4013 3' -60.6 NC_001650.1 + 30861 0.66 0.788438
Target:  5'- -uUCGAGGAGGagGaCgGCCGCCugGCCGa -3'
miRNA:   3'- gcGGUUCUUCCagC-GgCGGCGG--UGGC- -5'
4013 3' -60.6 NC_001650.1 + 51320 0.66 0.779667
Target:  5'- uCGCgGAGcGGG-CGCCaCCGCCuCCa -3'
miRNA:   3'- -GCGgUUCuUCCaGCGGcGGCGGuGGc -5'
4013 3' -60.6 NC_001650.1 + 77125 0.66 0.779667
Target:  5'- gGUCuGGguGGUCGCgGCgGCC-CCGu -3'
miRNA:   3'- gCGGuUCuuCCAGCGgCGgCGGuGGC- -5'
4013 3' -60.6 NC_001650.1 + 43677 0.66 0.779667
Target:  5'- gCGCUcgguAGAGGGUUGCCagugagGCgGCCACa- -3'
miRNA:   3'- -GCGGu---UCUUCCAGCGG------CGgCGGUGgc -5'
4013 3' -60.6 NC_001650.1 + 115286 0.66 0.774346
Target:  5'- aGCCAGGGAGGggggcggcguagagCGCUGguacguguacCCGCCGCg- -3'
miRNA:   3'- gCGGUUCUUCCa-------------GCGGC----------GGCGGUGgc -5'
4013 3' -60.6 NC_001650.1 + 91274 0.66 0.770776
Target:  5'- gGCgGGGGGacGGUCuuuGCCGCCaGCCcCCGg -3'
miRNA:   3'- gCGgUUCUU--CCAG---CGGCGG-CGGuGGC- -5'
4013 3' -60.6 NC_001650.1 + 55072 0.66 0.770776
Target:  5'- gGCgAAGAGGGcCGCCcCCGUguCCu -3'
miRNA:   3'- gCGgUUCUUCCaGCGGcGGCGguGGc -5'
4013 3' -60.6 NC_001650.1 + 99231 0.66 0.770776
Target:  5'- aCGCCcGGcucGGccUCGCCcCCGCCAUCGc -3'
miRNA:   3'- -GCGGuUCuu-CC--AGCGGcGGCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 105422 0.66 0.768086
Target:  5'- gGCCGAGcgccGGUCGCgGCggcgaucucgucccCGCUGCCGc -3'
miRNA:   3'- gCGGUUCuu--CCAGCGgCG--------------GCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 61137 0.66 0.761773
Target:  5'- cCGCCGcccccGGGUCccCCGCCGCCcCCa -3'
miRNA:   3'- -GCGGUucu--UCCAGc-GGCGGCGGuGGc -5'
4013 3' -60.6 NC_001650.1 + 136157 0.66 0.761773
Target:  5'- gCGCCu-GAAGG-CGCCccCCGCgGCCu -3'
miRNA:   3'- -GCGGuuCUUCCaGCGGc-GGCGgUGGc -5'
4013 3' -60.6 NC_001650.1 + 21533 0.66 0.761773
Target:  5'- uGCUggGAGGGcCGCgGCUGCgGuggacCCGg -3'
miRNA:   3'- gCGGuuCUUCCaGCGgCGGCGgU-----GGC- -5'
4013 3' -60.6 NC_001650.1 + 136654 0.66 0.752665
Target:  5'- uGCC-AGAcuGUacUGCCguGCCGCCACCa -3'
miRNA:   3'- gCGGuUCUucCA--GCGG--CGGCGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.