miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4013 3' -60.6 NC_001650.1 + 136506 1.08 0.001851
Target:  5'- cCGCCAAGAAGGUCGCCGCCGCCACCGc -3'
miRNA:   3'- -GCGGUUCUUCCAGCGGCGGCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 137701 0.86 0.056433
Target:  5'- aGCCAGGGcgcccGGUCGCCGCCGCC-CCGa -3'
miRNA:   3'- gCGGUUCUu----CCAGCGGCGGCGGuGGC- -5'
4013 3' -60.6 NC_001650.1 + 131437 0.79 0.158167
Target:  5'- gGCCccGAGGGcCGCCGCCGCCGCg- -3'
miRNA:   3'- gCGGuuCUUCCaGCGGCGGCGGUGgc -5'
4013 3' -60.6 NC_001650.1 + 41498 0.78 0.18278
Target:  5'- gCGCCuGGucucGGccgCGCCGCCGCCGCCGc -3'
miRNA:   3'- -GCGGuUCuu--CCa--GCGGCGGCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 19404 0.78 0.187198
Target:  5'- uGCCGcGggGGUCuGCuCGCgGCCGCCGg -3'
miRNA:   3'- gCGGUuCuuCCAG-CG-GCGgCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 55160 0.78 0.187198
Target:  5'- aGCCuGGcGGGGUCGCgCGCgGCCACCGc -3'
miRNA:   3'- gCGGuUC-UUCCAGCG-GCGgCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 161545 0.78 0.196316
Target:  5'- cCGCCAGGAuGGagGCCaGCCGCCgGCCGc -3'
miRNA:   3'- -GCGGUUCUuCCagCGG-CGGCGG-UGGC- -5'
4013 3' -60.6 NC_001650.1 + 58181 0.77 0.220821
Target:  5'- uGCCGugGGAGGGUCuUCGCCGCC-CCGa -3'
miRNA:   3'- gCGGU--UCUUCCAGcGGCGGCGGuGGC- -5'
4013 3' -60.6 NC_001650.1 + 142872 0.77 0.220821
Target:  5'- gGCCAacagGGAAauGGcCGCCGCCGCC-CCGg -3'
miRNA:   3'- gCGGU----UCUU--CCaGCGGCGGCGGuGGC- -5'
4013 3' -60.6 NC_001650.1 + 89485 0.76 0.247886
Target:  5'- cCGCCGAGGcgGGGuUCGCguggGCCGCCAUCGa -3'
miRNA:   3'- -GCGGUUCU--UCC-AGCGg---CGGCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 78786 0.76 0.271467
Target:  5'- aGCgGGGAcgAGaUCGCCGCCGCgACCGg -3'
miRNA:   3'- gCGgUUCU--UCcAGCGGCGGCGgUGGC- -5'
4013 3' -60.6 NC_001650.1 + 21790 0.75 0.290313
Target:  5'- aCGCCGGGGAGGgCGCCGgCCgagGCC-CCGg -3'
miRNA:   3'- -GCGGUUCUUCCaGCGGC-GG---CGGuGGC- -5'
4013 3' -60.6 NC_001650.1 + 161625 0.75 0.302771
Target:  5'- uCGCCcaacauaAAGAccgAGG-CGCCGCCGCC-CCGg -3'
miRNA:   3'- -GCGG-------UUCU---UCCaGCGGCGGCGGuGGC- -5'
4013 3' -60.6 NC_001650.1 + 125265 0.74 0.345522
Target:  5'- uGCC-AGAAGc-CGCCGCCGCCucCCGg -3'
miRNA:   3'- gCGGuUCUUCcaGCGGCGGCGGu-GGC- -5'
4013 3' -60.6 NC_001650.1 + 94992 0.74 0.352931
Target:  5'- gGCgAAGAGGGgccagcagUUGCCGCCGcCCGCCc -3'
miRNA:   3'- gCGgUUCUUCC--------AGCGGCGGC-GGUGGc -5'
4013 3' -60.6 NC_001650.1 + 66406 0.73 0.360451
Target:  5'- aGCagCAGGAGGGUgugCGggcccguggagcCCGCCGCCACCGg -3'
miRNA:   3'- gCG--GUUCUUCCA---GC------------GGCGGCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 164879 0.73 0.360451
Target:  5'- gGCCcuGAcuAGaGcgCGCCGCCGCCACCc -3'
miRNA:   3'- gCGGuuCU--UC-Ca-GCGGCGGCGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 131826 0.73 0.360451
Target:  5'- gGCCGGGgcGGUgGCCgGCCGCCGaCGu -3'
miRNA:   3'- gCGGUUCuuCCAgCGG-CGGCGGUgGC- -5'
4013 3' -60.6 NC_001650.1 + 19546 0.73 0.368083
Target:  5'- aGUCGGGggGGUugagCGCCGCgGucCCACCGg -3'
miRNA:   3'- gCGGUUCuuCCA----GCGGCGgC--GGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 130662 0.73 0.375824
Target:  5'- gGCCAGGAGGGUCaCCggggGCaagGCCGCCGu -3'
miRNA:   3'- gCGGUUCUUCCAGcGG----CGg--CGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.