miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4013 3' -60.6 NC_001650.1 + 154980 0.66 0.752665
Target:  5'- aGCCcacGGGGAGGUCcugaGCC-CgGCCACCc -3'
miRNA:   3'- gCGG---UUCUUCCAG----CGGcGgCGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 75075 0.66 0.752665
Target:  5'- gGCCGacuugaagaaguAGAccGGGUgCGCCGCCucguCCACCu -3'
miRNA:   3'- gCGGU------------UCU--UCCA-GCGGCGGc---GGUGGc -5'
4013 3' -60.6 NC_001650.1 + 142636 0.66 0.743461
Target:  5'- gGCCGgcGGAGGGggcugCgGCUGCUGCgGCCu -3'
miRNA:   3'- gCGGU--UCUUCCa----G-CGGCGGCGgUGGc -5'
4013 3' -60.6 NC_001650.1 + 42425 0.66 0.743461
Target:  5'- aGCCcGGggGGacUCG-CGCCGauCCACCa -3'
miRNA:   3'- gCGGuUCuuCC--AGCgGCGGC--GGUGGc -5'
4013 3' -60.6 NC_001650.1 + 25877 0.67 0.734169
Target:  5'- cCGCCGAGggGGgCGCCuuUGUCAUg- -3'
miRNA:   3'- -GCGGUUCuuCCaGCGGcgGCGGUGgc -5'
4013 3' -60.6 NC_001650.1 + 26740 0.67 0.734169
Target:  5'- gGCCuGGAGGGgcugUG-CGCCGCCuCCa -3'
miRNA:   3'- gCGGuUCUUCCa---GCgGCGGCGGuGGc -5'
4013 3' -60.6 NC_001650.1 + 48123 0.67 0.734169
Target:  5'- gGCC-AGggGGUCcaugacccCCGCgGCCAUCu -3'
miRNA:   3'- gCGGuUCuuCCAGc-------GGCGgCGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 62147 0.67 0.734169
Target:  5'- gGCCAGGGucAGGgggCGCCugaugugggccaGCC-CCGCCGc -3'
miRNA:   3'- gCGGUUCU--UCCa--GCGG------------CGGcGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 62033 0.67 0.734169
Target:  5'- gGCCucguGGAagugguccagcAGGUUGCCcagGgCGCCGCCGu -3'
miRNA:   3'- gCGGu---UCU-----------UCCAGCGG---CgGCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 76111 0.67 0.728555
Target:  5'- gGUCAgAGAAGGUguugaccguggucaGCUGCCGCCcCCGc -3'
miRNA:   3'- gCGGU-UCUUCCAg-------------CGGCGGCGGuGGC- -5'
4013 3' -60.6 NC_001650.1 + 126278 0.67 0.724797
Target:  5'- cCGCCcagcuGAGGGU-GCCGCCcCCgGCCGc -3'
miRNA:   3'- -GCGGuu---CUUCCAgCGGCGGcGG-UGGC- -5'
4013 3' -60.6 NC_001650.1 + 109491 0.67 0.715352
Target:  5'- uGCCAcccGGGGUCGCCGgacaagGCCGCCu -3'
miRNA:   3'- gCGGUuc-UUCCAGCGGCgg----CGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 83685 0.67 0.715352
Target:  5'- uCGCgAGGcuGAGGa-GCCGCUGCC-CCGa -3'
miRNA:   3'- -GCGgUUC--UUCCagCGGCGGCGGuGGC- -5'
4013 3' -60.6 NC_001650.1 + 46360 0.67 0.715352
Target:  5'- aGCCGGGGcgcGG-CGCCGCaucgGCCGCgGg -3'
miRNA:   3'- gCGGUUCUu--CCaGCGGCGg---CGGUGgC- -5'
4013 3' -60.6 NC_001650.1 + 74537 0.67 0.705843
Target:  5'- uGgCAGGGAGGcCGCCaCCGUgGCCc -3'
miRNA:   3'- gCgGUUCUUCCaGCGGcGGCGgUGGc -5'
4013 3' -60.6 NC_001650.1 + 47415 0.67 0.705843
Target:  5'- -cCCAAGAGGGUCaCCGCCaucuugGgCACCa -3'
miRNA:   3'- gcGGUUCUUCCAGcGGCGG------CgGUGGc -5'
4013 3' -60.6 NC_001650.1 + 868 0.67 0.705843
Target:  5'- uGCaugaGAGAGGGUCaGCCauauugaaGCUGCCAUCu -3'
miRNA:   3'- gCGg---UUCUUCCAG-CGG--------CGGCGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 167575 0.67 0.705843
Target:  5'- uGCaugaGAGAGGGUCaGCCauauugaaGCUGCCAUCu -3'
miRNA:   3'- gCGg---UUCUUCCAG-CGG--------CGGCGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 88585 0.67 0.701066
Target:  5'- aGCCuuccccuuugcgCGCCGCUGCCGCCGc -3'
miRNA:   3'- gCGGuucuucca----GCGGCGGCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 156704 0.67 0.700109
Target:  5'- gGCCcauaAAGAAGcuGUuguacacguucucccCGCCGCCGCC-CCGg -3'
miRNA:   3'- gCGG----UUCUUC--CA---------------GCGGCGGCGGuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.