miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4013 3' -60.6 NC_001650.1 + 868 0.67 0.705843
Target:  5'- uGCaugaGAGAGGGUCaGCCauauugaaGCUGCCAUCu -3'
miRNA:   3'- gCGg---UUCUUCCAG-CGG--------CGGCGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 5145 0.72 0.450242
Target:  5'- cCGCUAAGAuGGcCGCCGCuCGCCuaaucuGCCu -3'
miRNA:   3'- -GCGGUUCUuCCaGCGGCG-GCGG------UGGc -5'
4013 3' -60.6 NC_001650.1 + 19404 0.78 0.187198
Target:  5'- uGCCGcGggGGUCuGCuCGCgGCCGCCGg -3'
miRNA:   3'- gCGGUuCuuCCAG-CG-GCGgCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 19546 0.73 0.368083
Target:  5'- aGUCGGGggGGUugagCGCCGCgGucCCACCGg -3'
miRNA:   3'- gCGGUUCuuCCA----GCGGCGgC--GGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 21533 0.66 0.761773
Target:  5'- uGCUggGAGGGcCGCgGCUGCgGuggacCCGg -3'
miRNA:   3'- gCGGuuCUUCCaGCGgCGGCGgU-----GGC- -5'
4013 3' -60.6 NC_001650.1 + 21790 0.75 0.290313
Target:  5'- aCGCCGGGGAGGgCGCCGgCCgagGCC-CCGg -3'
miRNA:   3'- -GCGGUUCUUCCaGCGGC-GG---CGGuGGC- -5'
4013 3' -60.6 NC_001650.1 + 25877 0.67 0.734169
Target:  5'- cCGCCGAGggGGgCGCCuuUGUCAUg- -3'
miRNA:   3'- -GCGGUUCuuCCaGCGGcgGCGGUGgc -5'
4013 3' -60.6 NC_001650.1 + 26740 0.67 0.734169
Target:  5'- gGCCuGGAGGGgcugUG-CGCCGCCuCCa -3'
miRNA:   3'- gCGGuUCUUCCa---GCgGCGGCGGuGGc -5'
4013 3' -60.6 NC_001650.1 + 28760 0.7 0.560567
Target:  5'- gCGCCuucGGGGUcuuugaCGgUGCCGCCGCCGg -3'
miRNA:   3'- -GCGGuucUUCCA------GCgGCGGCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 30861 0.66 0.788438
Target:  5'- -uUCGAGGAGGagGaCgGCCGCCugGCCGa -3'
miRNA:   3'- gcGGUUCUUCCagC-GgCGGCGG--UGGC- -5'
4013 3' -60.6 NC_001650.1 + 38429 0.7 0.560567
Target:  5'- uCGCCGcuguGG-CGCCGCCGCUccgcaACCGg -3'
miRNA:   3'- -GCGGUucuuCCaGCGGCGGCGG-----UGGC- -5'
4013 3' -60.6 NC_001650.1 + 38486 0.66 0.797081
Target:  5'- cCGCCAu---GGcccUGCCGCCcuGCCACCu -3'
miRNA:   3'- -GCGGUucuuCCa--GCGGCGG--CGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 40147 0.68 0.666347
Target:  5'- uGaCCGAGugGAGGUCGUCcuuggaguucuggGCCGCCAUCu -3'
miRNA:   3'- gC-GGUUC--UUCCAGCGG-------------CGGCGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 40878 0.68 0.638125
Target:  5'- uGCCAGGu-GGUUGCCGaUCGCCAg-- -3'
miRNA:   3'- gCGGUUCuuCCAGCGGC-GGCGGUggc -5'
4013 3' -60.6 NC_001650.1 + 41498 0.78 0.18278
Target:  5'- gCGCCuGGucucGGccgCGCCGCCGCCGCCGc -3'
miRNA:   3'- -GCGGuUCuu--CCa--GCGGCGGCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 42279 0.69 0.579801
Target:  5'- gGCCGAGggGGuUUGCCcccCUGCCGCg- -3'
miRNA:   3'- gCGGUUCuuCC-AGCGGc--GGCGGUGgc -5'
4013 3' -60.6 NC_001650.1 + 42425 0.66 0.743461
Target:  5'- aGCCcGGggGGacUCG-CGCCGauCCACCa -3'
miRNA:   3'- gCGGuUCuuCC--AGCgGCGGC--GGUGGc -5'
4013 3' -60.6 NC_001650.1 + 43677 0.66 0.779667
Target:  5'- gCGCUcgguAGAGGGUUGCCagugagGCgGCCACa- -3'
miRNA:   3'- -GCGGu---UCUUCCAGCGG------CGgCGGUGgc -5'
4013 3' -60.6 NC_001650.1 + 46360 0.67 0.715352
Target:  5'- aGCCGGGGcgcGG-CGCCGCaucgGCCGCgGg -3'
miRNA:   3'- gCGGUUCUu--CCaGCGGCGg---CGGUGgC- -5'
4013 3' -60.6 NC_001650.1 + 47415 0.67 0.705843
Target:  5'- -cCCAAGAGGGUCaCCGCCaucuugGgCACCa -3'
miRNA:   3'- gcGGUUCUUCCAGcGGCGG------CgGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.