miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4013 3' -60.6 NC_001650.1 + 38429 0.7 0.560567
Target:  5'- uCGCCGcuguGG-CGCCGCCGCUccgcaACCGg -3'
miRNA:   3'- -GCGGUucuuCCaGCGGCGGCGG-----UGGC- -5'
4013 3' -60.6 NC_001650.1 + 5145 0.72 0.450242
Target:  5'- cCGCUAAGAuGGcCGCCGCuCGCCuaaucuGCCu -3'
miRNA:   3'- -GCGGUUCUuCCaGCGGCG-GCGG------UGGc -5'
4013 3' -60.6 NC_001650.1 + 171852 0.72 0.450242
Target:  5'- cCGCUAAGAuGGcCGCCGCuCGCCuaaucuGCCu -3'
miRNA:   3'- -GCGGUUCUuCCaGCGGCG-GCGG------UGGc -5'
4013 3' -60.6 NC_001650.1 + 95419 0.71 0.459004
Target:  5'- gGCCAcAGggGG-CGUCGUCGCCAUa- -3'
miRNA:   3'- gCGGU-UCuuCCaGCGGCGGCGGUGgc -5'
4013 3' -60.6 NC_001650.1 + 122305 0.71 0.459004
Target:  5'- gCGCgCGAGcagcuGGcCGCCGCgGCCGCCu -3'
miRNA:   3'- -GCG-GUUCuu---CCaGCGGCGgCGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 125047 0.71 0.504103
Target:  5'- aCGCCGGGcGGGgCGCCucGCCcgGCCAUCGg -3'
miRNA:   3'- -GCGGUUCuUCCaGCGG--CGG--CGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 50746 0.7 0.541513
Target:  5'- gGCCGcGGuGGG-CGCCGCCaCCACCu -3'
miRNA:   3'- gCGGU-UCuUCCaGCGGCGGcGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 81599 0.7 0.541513
Target:  5'- uCGCCcgacgcGAGGUCGCCGCacagggcgcgCGCCGCgCGg -3'
miRNA:   3'- -GCGGuuc---UUCCAGCGGCG----------GCGGUG-GC- -5'
4013 3' -60.6 NC_001650.1 + 121531 0.7 0.551015
Target:  5'- gGUCAGGGAGGUC-CUGCgGaCCGCCc -3'
miRNA:   3'- gCGGUUCUUCCAGcGGCGgC-GGUGGc -5'
4013 3' -60.6 NC_001650.1 + 129045 0.72 0.424522
Target:  5'- aCGCCAuggAGgcGGUgGCCGCgCGCgACCc -3'
miRNA:   3'- -GCGGU---UCuuCCAgCGGCG-GCGgUGGc -5'
4013 3' -60.6 NC_001650.1 + 130083 0.72 0.407871
Target:  5'- gGCCGGGGAGGggggagaGCCGCCcGCCAagcCCa -3'
miRNA:   3'- gCGGUUCUUCCag-----CGGCGG-CGGU---GGc -5'
4013 3' -60.6 NC_001650.1 + 130662 0.73 0.375824
Target:  5'- gGCCAGGAGGGUCaCCggggGCaagGCCGCCGu -3'
miRNA:   3'- gCGGUUCUUCCAGcGG----CGg--CGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 58181 0.77 0.220821
Target:  5'- uGCCGugGGAGGGUCuUCGCCGCC-CCGa -3'
miRNA:   3'- gCGGU--UCUUCCAGcGGCGGCGGuGGC- -5'
4013 3' -60.6 NC_001650.1 + 142872 0.77 0.220821
Target:  5'- gGCCAacagGGAAauGGcCGCCGCCGCC-CCGg -3'
miRNA:   3'- gCGGU----UCUU--CCaGCGGCGGCGGuGGC- -5'
4013 3' -60.6 NC_001650.1 + 89485 0.76 0.247886
Target:  5'- cCGCCGAGGcgGGGuUCGCguggGCCGCCAUCGa -3'
miRNA:   3'- -GCGGUUCU--UCC-AGCGg---CGGCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 78786 0.76 0.271467
Target:  5'- aGCgGGGAcgAGaUCGCCGCCGCgACCGg -3'
miRNA:   3'- gCGgUUCU--UCcAGCGGCGGCGgUGGC- -5'
4013 3' -60.6 NC_001650.1 + 21790 0.75 0.290313
Target:  5'- aCGCCGGGGAGGgCGCCGgCCgagGCC-CCGg -3'
miRNA:   3'- -GCGGUUCUUCCaGCGGC-GG---CGGuGGC- -5'
4013 3' -60.6 NC_001650.1 + 66406 0.73 0.360451
Target:  5'- aGCagCAGGAGGGUgugCGggcccguggagcCCGCCGCCACCGg -3'
miRNA:   3'- gCG--GUUCUUCCA---GC------------GGCGGCGGUGGC- -5'
4013 3' -60.6 NC_001650.1 + 164879 0.73 0.360451
Target:  5'- gGCCcuGAcuAGaGcgCGCCGCCGCCACCc -3'
miRNA:   3'- gCGGuuCU--UC-Ca-GCGGCGGCGGUGGc -5'
4013 3' -60.6 NC_001650.1 + 131826 0.73 0.360451
Target:  5'- gGCCGGGgcGGUgGCCgGCCGCCGaCGu -3'
miRNA:   3'- gCGGUUCuuCCAgCGG-CGGCGGUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.