miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4013 5' -47.9 NC_001650.1 + 24212 0.66 0.999823
Target:  5'- cGCCucagcGGCGGUGGAGUAcCUCaGGu- -3'
miRNA:   3'- -CGGuu---CUGCCACUUUAUaGAGaCCuu -5'
4013 5' -47.9 NC_001650.1 + 24086 0.66 0.999773
Target:  5'- gGCCGAGAUGGccauggcgGGGAUgagGUCcCUGGAc -3'
miRNA:   3'- -CGGUUCUGCCa-------CUUUA---UAGaGACCUu -5'
4013 5' -47.9 NC_001650.1 + 155216 0.66 0.99971
Target:  5'- gGCCGGGACGGUcugg-AUCUUgGGGGu -3'
miRNA:   3'- -CGGUUCUGCCAcuuuaUAGAGaCCUU- -5'
4013 5' -47.9 NC_001650.1 + 131667 0.66 0.99971
Target:  5'- cGCCcccucccugaggGGGGCGGUGGAGgugCUCaGGAc -3'
miRNA:   3'- -CGG------------UUCUGCCACUUUauaGAGaCCUu -5'
4013 5' -47.9 NC_001650.1 + 41470 0.66 0.99971
Target:  5'- cCCGAGugGGgugguuggGAAggcaguuuuGUAUCUCUGGc- -3'
miRNA:   3'- cGGUUCugCCa-------CUU---------UAUAGAGACCuu -5'
4013 5' -47.9 NC_001650.1 + 82020 0.67 0.999424
Target:  5'- uGCCugGAGuGCGccugGggGUGUCUCUGGGg -3'
miRNA:   3'- -CGG--UUC-UGCca--CuuUAUAGAGACCUu -5'
4013 5' -47.9 NC_001650.1 + 122790 0.67 0.999171
Target:  5'- aCCGAGGCGGUGGugcgcaaggugCUGGAGu -3'
miRNA:   3'- cGGUUCUGCCACUuuauaga----GACCUU- -5'
4013 5' -47.9 NC_001650.1 + 165491 0.68 0.998782
Target:  5'- cCCGGGGCGGUGAGcuucugccaccuUCUgUGGGAa -3'
miRNA:   3'- cGGUUCUGCCACUUuau---------AGAgACCUU- -5'
4013 5' -47.9 NC_001650.1 + 29609 0.68 0.997252
Target:  5'- aCCuGGGCGGUGAcugGUCUgaGGAGu -3'
miRNA:   3'- cGGuUCUGCCACUuuaUAGAgaCCUU- -5'
4013 5' -47.9 NC_001650.1 + 49563 0.69 0.99674
Target:  5'- cCCGAGAUGGUGcacGGGgugGUCUCUGuGAu -3'
miRNA:   3'- cGGUUCUGCCAC---UUUa--UAGAGAC-CUu -5'
4013 5' -47.9 NC_001650.1 + 30440 0.69 0.996152
Target:  5'- cGgCGAGACGGUGGcc--UUUCUGGGg -3'
miRNA:   3'- -CgGUUCUGCCACUuuauAGAGACCUu -5'
4013 5' -47.9 NC_001650.1 + 55766 0.7 0.992873
Target:  5'- aGCCu-GAUGGUGGAGUcuaugUUCUGGAu -3'
miRNA:   3'- -CGGuuCUGCCACUUUAua---GAGACCUu -5'
4013 5' -47.9 NC_001650.1 + 93893 0.7 0.987022
Target:  5'- cGCCGAGGCGGUGGcaaaGGUGUUcaaggagaggugcCUGGAGg -3'
miRNA:   3'- -CGGUUCUGCCACU----UUAUAGa------------GACCUU- -5'
4013 5' -47.9 NC_001650.1 + 88509 0.71 0.985998
Target:  5'- cGCC-GGGCGGgagGAAGcgggggcgccgGUCUCUGGAAa -3'
miRNA:   3'- -CGGuUCUGCCa--CUUUa----------UAGAGACCUU- -5'
4013 5' -47.9 NC_001650.1 + 27500 0.71 0.984157
Target:  5'- aCCGAGGUGGUGAcuAAUAUCaugCUGGGAc -3'
miRNA:   3'- cGGUUCUGCCACU--UUAUAGa--GACCUU- -5'
4013 5' -47.9 NC_001650.1 + 121201 0.71 0.97993
Target:  5'- cGCCcggcGGACGGUGGAGgccuUC-CUGGAGc -3'
miRNA:   3'- -CGGu---UCUGCCACUUUau--AGaGACCUU- -5'
4013 5' -47.9 NC_001650.1 + 55102 0.72 0.974916
Target:  5'- cCCGGGcGCGGgGGAGUGUCUCaGGAAg -3'
miRNA:   3'- cGGUUC-UGCCaCUUUAUAGAGaCCUU- -5'
4013 5' -47.9 NC_001650.1 + 142394 0.73 0.958501
Target:  5'- cCCGGGGCGGUGGGAgagggggGUCUCUacGGGc -3'
miRNA:   3'- cGGUUCUGCCACUUUa------UAGAGA--CCUu -5'
4013 5' -47.9 NC_001650.1 + 136540 1.1 0.016914
Target:  5'- cGCCAAGACGGUGAAAUAUCUCUGGAAa -3'
miRNA:   3'- -CGGUUCUGCCACUUUAUAGAGACCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.