miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4015 3' -60.1 NC_001650.1 + 73514 0.66 0.813445
Target:  5'- uGCUGCgGCAGccuggCCugcCCGCUggGUCCCg -3'
miRNA:   3'- gUGACGgUGUCca---GGu--GGCGG--CAGGG- -5'
4015 3' -60.1 NC_001650.1 + 61372 0.66 0.813445
Target:  5'- gGCUGCUGCAGGcucUCUAugaaggcguCCGUggUGUCCCu -3'
miRNA:   3'- gUGACGGUGUCC---AGGU---------GGCG--GCAGGG- -5'
4015 3' -60.1 NC_001650.1 + 123438 0.66 0.813445
Target:  5'- cUACUGCCuCAGGaCCcCCG-CGcCCCu -3'
miRNA:   3'- -GUGACGGuGUCCaGGuGGCgGCaGGG- -5'
4015 3' -60.1 NC_001650.1 + 43702 0.66 0.808417
Target:  5'- gGCgGCCACAGGgucugCCACCagauggcgcguguagGUC-UCCCa -3'
miRNA:   3'- gUGaCGGUGUCCa----GGUGG---------------CGGcAGGG- -5'
4015 3' -60.1 NC_001650.1 + 51310 0.66 0.805036
Target:  5'- gGCUGUagucucgcggaGCGGGcgCCACCGCC-UCCa -3'
miRNA:   3'- gUGACGg----------UGUCCa-GGUGGCGGcAGGg -5'
4015 3' -60.1 NC_001650.1 + 145743 0.66 0.804187
Target:  5'- gGCaggGCCauggcggGCAGGUCCGCCGg-GUUCCa -3'
miRNA:   3'- gUGa--CGG-------UGUCCAGGUGGCggCAGGG- -5'
4015 3' -60.1 NC_001650.1 + 133465 0.66 0.796483
Target:  5'- -cCUGCgaGCAGGUgguggcggcgcCCACCGCgG-CCCu -3'
miRNA:   3'- guGACGg-UGUCCA-----------GGUGGCGgCaGGG- -5'
4015 3' -60.1 NC_001650.1 + 165962 0.66 0.796483
Target:  5'- aGCUGCUuuCGGGcCCGCgGUggucaGUCCCg -3'
miRNA:   3'- gUGACGGu-GUCCaGGUGgCGg----CAGGG- -5'
4015 3' -60.1 NC_001650.1 + 135621 0.66 0.796483
Target:  5'- aGCUaGCCugGcGcCCG-CGCCGUCCCc -3'
miRNA:   3'- gUGA-CGGugUcCaGGUgGCGGCAGGG- -5'
4015 3' -60.1 NC_001650.1 + 72746 0.66 0.796483
Target:  5'- aCGCUGCUggugaACGGGUUCGCgGCCuuugCCa -3'
miRNA:   3'- -GUGACGG-----UGUCCAGGUGgCGGca--GGg -5'
4015 3' -60.1 NC_001650.1 + 106350 0.66 0.796483
Target:  5'- gACUGUCagaaugacgcauACAGGUCCcucgugaccCUGCCGUgCCa -3'
miRNA:   3'- gUGACGG------------UGUCCAGGu--------GGCGGCAgGG- -5'
4015 3' -60.1 NC_001650.1 + 26424 0.66 0.796483
Target:  5'- gGCUGCCGCGGG-CC-CCGUggaggagaaCGUgggcaCCCa -3'
miRNA:   3'- gUGACGGUGUCCaGGuGGCG---------GCA-----GGG- -5'
4015 3' -60.1 NC_001650.1 + 20882 0.66 0.79562
Target:  5'- cCACcGCCAUAGuagucacGUCCcCCGCCG-CCg -3'
miRNA:   3'- -GUGaCGGUGUC-------CAGGuGGCGGCaGGg -5'
4015 3' -60.1 NC_001650.1 + 18240 0.66 0.787795
Target:  5'- aGCUccaGCUGCGGGacugaCCACCGCgGgCCCg -3'
miRNA:   3'- gUGA---CGGUGUCCa----GGUGGCGgCaGGG- -5'
4015 3' -60.1 NC_001650.1 + 110327 0.66 0.779866
Target:  5'- cCACgaaCUGCAGGUCCguGCCGCUGguggcgggcgcuccgCCCa -3'
miRNA:   3'- -GUGac-GGUGUCCAGG--UGGCGGCa--------------GGG- -5'
4015 3' -60.1 NC_001650.1 + 23160 0.66 0.778978
Target:  5'- gACgGCCuccuACAGGcCCACCGCgCccuccaggGUCCCc -3'
miRNA:   3'- gUGaCGG----UGUCCaGGUGGCG-G--------CAGGG- -5'
4015 3' -60.1 NC_001650.1 + 126391 0.66 0.77363
Target:  5'- cCGCUGCCACcgcccGGagCGaugcccuucgcgcccCCGCCGcUCCCa -3'
miRNA:   3'- -GUGACGGUGu----CCagGU---------------GGCGGC-AGGG- -5'
4015 3' -60.1 NC_001650.1 + 152690 0.67 0.760992
Target:  5'- ---cGCgGCAGGUCCGCC-Ca-UCCCa -3'
miRNA:   3'- gugaCGgUGUCCAGGUGGcGgcAGGG- -5'
4015 3' -60.1 NC_001650.1 + 85714 0.67 0.760992
Target:  5'- gACUGCCuGCGGG-CCAaugagcaCGCCuccUCCCa -3'
miRNA:   3'- gUGACGG-UGUCCaGGUg------GCGGc--AGGG- -5'
4015 3' -60.1 NC_001650.1 + 50802 0.67 0.760992
Target:  5'- aGCaGCCcCAGGUCuucuucucgggCACCGCgGcCCCg -3'
miRNA:   3'- gUGaCGGuGUCCAG-----------GUGGCGgCaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.