miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4017 3' -53.7 NC_001650.1 + 166723 0.66 0.970807
Target:  5'- --cGCGAGGgGCAAAAgaccCCGGGGg-- -3'
miRNA:   3'- uuuCGCUCCaCGUUUUa---GGUCCCggg -5'
4017 3' -53.7 NC_001650.1 + 27394 0.66 0.970807
Target:  5'- -uGGCGGGGcUGCugccAGAcgCCcGGuGCCCg -3'
miRNA:   3'- uuUCGCUCC-ACG----UUUuaGGuCC-CGGG- -5'
4017 3' -53.7 NC_001650.1 + 109089 0.66 0.970807
Target:  5'- cGGAGCGAcGUGCuGAgcGUCCuGGGCguCCu -3'
miRNA:   3'- -UUUCGCUcCACGuUU--UAGGuCCCG--GG- -5'
4017 3' -53.7 NC_001650.1 + 26920 0.66 0.970807
Target:  5'- uGGGCGAGG-GCGGGggCgGGGagguGCCCc -3'
miRNA:   3'- uUUCGCUCCaCGUUUuaGgUCC----CGGG- -5'
4017 3' -53.7 NC_001650.1 + 89396 0.66 0.970807
Target:  5'- --cGCGcGGGUGguGGAgaCGGGGUCCc -3'
miRNA:   3'- uuuCGC-UCCACguUUUagGUCCCGGG- -5'
4017 3' -53.7 NC_001650.1 + 16 0.66 0.970807
Target:  5'- --cGCGAGGgGCAAAAgaccCCGGGGg-- -3'
miRNA:   3'- uuuCGCUCCaCGUUUUa---GGUCCCggg -5'
4017 3' -53.7 NC_001650.1 + 6650 0.66 0.969921
Target:  5'- aGAGGCGGGGUGagugucugugAGAGUCCAucuuguuguuggguGGGCUUu -3'
miRNA:   3'- -UUUCGCUCCACg---------UUUUAGGU--------------CCCGGG- -5'
4017 3' -53.7 NC_001650.1 + 173357 0.66 0.969921
Target:  5'- aGAGGCGGGGUGagugucugugAGAGUCCAucuuguuguuggguGGGCUUu -3'
miRNA:   3'- -UUUCGCUCCACg---------UUUUAGGU--------------CCCGGG- -5'
4017 3' -53.7 NC_001650.1 + 175280 0.66 0.967777
Target:  5'- --uGCGGGGUGcCGGGGUUa--GGCCCc -3'
miRNA:   3'- uuuCGCUCCAC-GUUUUAGgucCCGGG- -5'
4017 3' -53.7 NC_001650.1 + 8573 0.66 0.967777
Target:  5'- --uGCGGGGUGcCGGGGUUa--GGCCCc -3'
miRNA:   3'- uuuCGCUCCAC-GUUUUAGgucCCGGG- -5'
4017 3' -53.7 NC_001650.1 + 47839 0.66 0.967777
Target:  5'- gGGGGgGAGGUGCccagagUgGGuGGCCCa -3'
miRNA:   3'- -UUUCgCUCCACGuuuua-GgUC-CCGGG- -5'
4017 3' -53.7 NC_001650.1 + 42884 0.66 0.967777
Target:  5'- gGAAGCGAGGgGCGAGGUauuaaGGGGaaaaaggaCCg -3'
miRNA:   3'- -UUUCGCUCCaCGUUUUAgg---UCCCg-------GG- -5'
4017 3' -53.7 NC_001650.1 + 94326 0.66 0.967777
Target:  5'- cAGGGUGAGGcucaggGCcgcGUCCAGGGaCUCu -3'
miRNA:   3'- -UUUCGCUCCa-----CGuuuUAGGUCCC-GGG- -5'
4017 3' -53.7 NC_001650.1 + 69719 0.66 0.967777
Target:  5'- cAGGCcccGAGGaGCAGucUCCGGacGGCCCu -3'
miRNA:   3'- uUUCG---CUCCaCGUUuuAGGUC--CCGGG- -5'
4017 3' -53.7 NC_001650.1 + 21683 0.66 0.967777
Target:  5'- --cGCGGGGgggcccUGCAcccuGUCCAGGGacgucgccCCCa -3'
miRNA:   3'- uuuCGCUCC------ACGUuu--UAGGUCCC--------GGG- -5'
4017 3' -53.7 NC_001650.1 + 137018 0.66 0.967777
Target:  5'- aGAGGCaccucccaaacuGGGaGUGC-AGGUCCAuGGGCUCg -3'
miRNA:   3'- -UUUCG------------CUC-CACGuUUUAGGU-CCCGGG- -5'
4017 3' -53.7 NC_001650.1 + 145962 0.66 0.967777
Target:  5'- cGGGCGAGG----AAGUCCcGGGaCCCg -3'
miRNA:   3'- uUUCGCUCCacguUUUAGGuCCC-GGG- -5'
4017 3' -53.7 NC_001650.1 + 157860 0.66 0.967777
Target:  5'- cAGGGUgGAGGUGCAca--CCAGGGUg- -3'
miRNA:   3'- -UUUCG-CUCCACGUuuuaGGUCCCGgg -5'
4017 3' -53.7 NC_001650.1 + 101939 0.66 0.967777
Target:  5'- cGAGCGGGGgGCucccuccUCCGGGaCCCc -3'
miRNA:   3'- uUUCGCUCCaCGuuuu---AGGUCCcGGG- -5'
4017 3' -53.7 NC_001650.1 + 107545 0.66 0.967146
Target:  5'- cAAGGCcacgGGGGUGCAGuggcccauguacAUCCugGGGGCCg -3'
miRNA:   3'- -UUUCG----CUCCACGUUu-----------UAGG--UCCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.