miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4018 5' -57.8 NC_001650.1 + 88953 0.66 0.863483
Target:  5'- uUCGAGGGCcucccGCcGGCCCUcCUCuACg -3'
miRNA:   3'- cAGCUCUCGau---CGaCCGGGA-GAGcUG- -5'
4018 5' -57.8 NC_001650.1 + 130627 0.66 0.855923
Target:  5'- aUCGGGgagccaaucagaGGCUAGCUGuCCCUUgaUUGACg -3'
miRNA:   3'- cAGCUC------------UCGAUCGACcGGGAG--AGCUG- -5'
4018 5' -57.8 NC_001650.1 + 122047 0.66 0.855923
Target:  5'- uUCGAGGacGCggcggGGCUGGCCCacaUCaGGCg -3'
miRNA:   3'- cAGCUCU--CGa----UCGACCGGGag-AG-CUG- -5'
4018 5' -57.8 NC_001650.1 + 96083 0.66 0.848166
Target:  5'- aUCGAGGGCUucGGuUUGGCCg-CUCGGg -3'
miRNA:   3'- cAGCUCUCGA--UC-GACCGGgaGAGCUg -5'
4018 5' -57.8 NC_001650.1 + 92383 0.67 0.823779
Target:  5'- uUUGGGGGCgggGGUgggGGUCC-CUCGGCc -3'
miRNA:   3'- cAGCUCUCGa--UCGa--CCGGGaGAGCUG- -5'
4018 5' -57.8 NC_001650.1 + 50844 0.67 0.815301
Target:  5'- -gCGAGGGCggcgAGCU-GCCCUUUCuGCu -3'
miRNA:   3'- caGCUCUCGa---UCGAcCGGGAGAGcUG- -5'
4018 5' -57.8 NC_001650.1 + 42748 0.67 0.797868
Target:  5'- -gCGAGAGgcCUGGCcuuUGGuCCCUCUCG-Cu -3'
miRNA:   3'- caGCUCUC--GAUCG---ACC-GGGAGAGCuG- -5'
4018 5' -57.8 NC_001650.1 + 124463 0.68 0.755672
Target:  5'- cGUgGGGGGCgccucgcccccgggGGCcacgGGCCC-CUCGACg -3'
miRNA:   3'- -CAgCUCUCGa-------------UCGa---CCGGGaGAGCUG- -5'
4018 5' -57.8 NC_001650.1 + 102591 0.68 0.742345
Target:  5'- -aCGGGGG--AGCUGGCCCgcgCGGCg -3'
miRNA:   3'- caGCUCUCgaUCGACCGGGagaGCUG- -5'
4018 5' -57.8 NC_001650.1 + 52601 0.68 0.732711
Target:  5'- -cCGGGAGCUcugggaugggGGCcacUGGCCCgggggucCUCGGCa -3'
miRNA:   3'- caGCUCUCGA----------UCG---ACCGGGa------GAGCUG- -5'
4018 5' -57.8 NC_001650.1 + 120850 0.69 0.673439
Target:  5'- --gGAGcGCUGGCUGGCgCUCUCcuacgcGGCg -3'
miRNA:   3'- cagCUCuCGAUCGACCGgGAGAG------CUG- -5'
4018 5' -57.8 NC_001650.1 + 24021 0.73 0.476106
Target:  5'- -cUGAGGGCcaagaGGCUGGCCgUCUCGGg -3'
miRNA:   3'- caGCUCUCGa----UCGACCGGgAGAGCUg -5'
4018 5' -57.8 NC_001650.1 + 127649 0.76 0.311631
Target:  5'- cUCGGGcGCUgAGUUGGCCCUCgCGGCg -3'
miRNA:   3'- cAGCUCuCGA-UCGACCGGGAGaGCUG- -5'
4018 5' -57.8 NC_001650.1 + 130530 0.99 0.010206
Target:  5'- gGUCGAGAGCcGGCUGGCCCUCUCGGCc -3'
miRNA:   3'- -CAGCUCUCGaUCGACCGGGAGAGCUG- -5'
4018 5' -57.8 NC_001650.1 + 140761 1.08 0.002528
Target:  5'- gGUCGAGAGCUAGCUGGCCCUCUCGACc -3'
miRNA:   3'- -CAGCUCUCGAUCGACCGGGAGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.