miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4019 3' -64.6 NC_001650.1 + 152412 0.66 0.626153
Target:  5'- uCCCuGGGUCUUuuGUGUGGUGGcuuuuuuacUCCa -3'
miRNA:   3'- -GGGcUCCGGGAggCACGCCGCC---------AGGa -5'
4019 3' -64.6 NC_001650.1 + 59749 0.66 0.616706
Target:  5'- gCCCGuGGCCC-CCG-GgGGCGaGgcgCCc -3'
miRNA:   3'- -GGGCuCCGGGaGGCaCgCCGC-Ca--GGa -5'
4019 3' -64.6 NC_001650.1 + 131439 0.66 0.616706
Target:  5'- cCCCGAGGgCCgCCGccGCcGCGaGUCCc -3'
miRNA:   3'- -GGGCUCCgGGaGGCa-CGcCGC-CAGGa -5'
4019 3' -64.6 NC_001650.1 + 24200 0.66 0.616706
Target:  5'- gCCGcuGUCCUCCGccucaGCGGCGGUg-- -3'
miRNA:   3'- gGGCucCGGGAGGCa----CGCCGCCAgga -5'
4019 3' -64.6 NC_001650.1 + 100077 0.66 0.616706
Target:  5'- cCCCGAGGCgcgCCUcuccCCGcaccUGCGGaCGG-CCUc -3'
miRNA:   3'- -GGGCUCCG---GGA----GGC----ACGCC-GCCaGGA- -5'
4019 3' -64.6 NC_001650.1 + 162243 0.66 0.614817
Target:  5'- cCCCGGGGUCC-CCGaggggcgUGaagcccagguagcCGGgGGUCCUg -3'
miRNA:   3'- -GGGCUCCGGGaGGC-------AC-------------GCCgCCAGGA- -5'
4019 3' -64.6 NC_001650.1 + 19581 0.66 0.588446
Target:  5'- gCCCGGGuGCCgCgcggcCCGggGCGGCGuUCCg -3'
miRNA:   3'- -GGGCUC-CGG-Ga----GGCa-CGCCGCcAGGa -5'
4019 3' -64.6 NC_001650.1 + 64291 0.66 0.585631
Target:  5'- cCCCGGGGCaCCUUCGUGUucgccuucagcgugGGCGacggCCc -3'
miRNA:   3'- -GGGCUCCG-GGAGGCACG--------------CCGCca--GGa -5'
4019 3' -64.6 NC_001650.1 + 26260 0.66 0.579072
Target:  5'- cCCaCGAGGCCCacgcgCgGUGCcucaaccacucGGgGGUCCc -3'
miRNA:   3'- -GG-GCUCCGGGa----GgCACG-----------CCgCCAGGa -5'
4019 3' -64.6 NC_001650.1 + 131806 0.67 0.569732
Target:  5'- cCCCaGGGCCUUCCuGUucaggccgggGCGGUGG-CCg -3'
miRNA:   3'- -GGGcUCCGGGAGG-CA----------CGCCGCCaGGa -5'
4019 3' -64.6 NC_001650.1 + 109360 0.67 0.551167
Target:  5'- gCCCG-GGCCUcCCGgacGCGGaCGGgccCCUg -3'
miRNA:   3'- -GGGCuCCGGGaGGCa--CGCC-GCCa--GGA- -5'
4019 3' -64.6 NC_001650.1 + 46913 0.67 0.551167
Target:  5'- gCUCGuGGCCCagCUGUGUcaGGUGGUCa- -3'
miRNA:   3'- -GGGCuCCGGGa-GGCACG--CCGCCAGga -5'
4019 3' -64.6 NC_001650.1 + 71411 0.67 0.541953
Target:  5'- uCCCGAGGCCC-CCGaGCGcauggaGGcCCa -3'
miRNA:   3'- -GGGCUCCGGGaGGCaCGCcg----CCaGGa -5'
4019 3' -64.6 NC_001650.1 + 41317 0.67 0.541953
Target:  5'- gCCCGAGcGCgCCggcugcacgggCCGgggcgGCGGCGG-CCa -3'
miRNA:   3'- -GGGCUC-CG-GGa----------GGCa----CGCCGCCaGGa -5'
4019 3' -64.6 NC_001650.1 + 119946 0.67 0.532791
Target:  5'- cCCCGGGGCuCCUgCGgGUGGaaGGUCUUu -3'
miRNA:   3'- -GGGCUCCG-GGAgGCaCGCCg-CCAGGA- -5'
4019 3' -64.6 NC_001650.1 + 130971 0.67 0.523686
Target:  5'- uCCCaGAGGCCCgucUUCGagGCGGCGccCCUg -3'
miRNA:   3'- -GGG-CUCCGGG---AGGCa-CGCCGCcaGGA- -5'
4019 3' -64.6 NC_001650.1 + 142671 0.68 0.505658
Target:  5'- aCCUGAGaCCC-CgGcUGUGGUGGUCCa -3'
miRNA:   3'- -GGGCUCcGGGaGgC-ACGCCGCCAGGa -5'
4019 3' -64.6 NC_001650.1 + 132935 0.68 0.487902
Target:  5'- gCCCGAGGguCCCcCCGcgGCgcgagcccuccGGUGGUCCg -3'
miRNA:   3'- -GGGCUCC--GGGaGGCa-CG-----------CCGCCAGGa -5'
4019 3' -64.6 NC_001650.1 + 129675 0.68 0.479135
Target:  5'- aUCCaGGGGUCCaaaaUCCGggggucgcgaGCGGUGGUCCa -3'
miRNA:   3'- -GGG-CUCCGGG----AGGCa---------CGCCGCCAGGa -5'
4019 3' -64.6 NC_001650.1 + 93119 0.68 0.479135
Target:  5'- aCCGGGGCCacggCCGUgGCGGCucagaaccuGUCCa -3'
miRNA:   3'- gGGCUCCGGga--GGCA-CGCCGc--------CAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.