miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4019 5' -53.8 NC_001650.1 + 50504 0.65 0.97833
Target:  5'- uCUGGCGCCCCccgcucccaguuuUCAgAgGCAGccgcaggugcgGGCCUCg -3'
miRNA:   3'- -GGUUGUGGGG-------------AGUgUgCGUU-----------UCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 149580 0.65 0.977862
Target:  5'- cCCAcCAcCCCCUCuucuccuccucagaACGCuggucGCAGAGUCUCu -3'
miRNA:   3'- -GGUuGU-GGGGAG--------------UGUG-----CGUUUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 2339 0.66 0.976166
Target:  5'- cCCAGaCACCCCgCGCcgcgcccgugGCGCGgcGCCa- -3'
miRNA:   3'- -GGUU-GUGGGGaGUG----------UGCGUuuCGGag -5'
4019 5' -53.8 NC_001650.1 + 99042 0.66 0.976166
Target:  5'- -uGACGCCCCUgucccucugcaGCACGgAugccAGCCUCu -3'
miRNA:   3'- ggUUGUGGGGAg----------UGUGCgUu---UCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 97126 0.66 0.976166
Target:  5'- cCCAACACCCUgcuagACACGguGGuCUUCa -3'
miRNA:   3'- -GGUUGUGGGGag---UGUGCguUUcGGAG- -5'
4019 5' -53.8 NC_001650.1 + 117717 0.66 0.976166
Target:  5'- gCCcGCACCgC-CGCGCGCAgcGUgUCa -3'
miRNA:   3'- -GGuUGUGGgGaGUGUGCGUuuCGgAG- -5'
4019 5' -53.8 NC_001650.1 + 160579 0.66 0.976166
Target:  5'- cCCuGCGCCCCcUugAgGUggGGCCa- -3'
miRNA:   3'- -GGuUGUGGGGaGugUgCGuuUCGGag -5'
4019 5' -53.8 NC_001650.1 + 61335 0.66 0.976166
Target:  5'- cCCAGCucCgCCCUCAgCAUGCcc-GCCUUg -3'
miRNA:   3'- -GGUUGu-G-GGGAGU-GUGCGuuuCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 52552 0.66 0.976166
Target:  5'- uCCAccGCcCCCCUCagggaggggGCGCGCAGgcaggcGGCCg- -3'
miRNA:   3'- -GGU--UGuGGGGAG---------UGUGCGUU------UCGGag -5'
4019 5' -53.8 NC_001650.1 + 48263 0.66 0.976166
Target:  5'- aCGACACCCCUCuguC-CGU---GCCUg -3'
miRNA:   3'- gGUUGUGGGGAGu--GuGCGuuuCGGAg -5'
4019 5' -53.8 NC_001650.1 + 169046 0.66 0.976166
Target:  5'- cCCAGaCACCCCgCGCcgcgcccgugGCGCGgcGCCa- -3'
miRNA:   3'- -GGUU-GUGGGGaGUG----------UGCGUuuCGGag -5'
4019 5' -53.8 NC_001650.1 + 3609 0.66 0.97358
Target:  5'- -gGGCGCCUCUCucCGgGgGAAGCCUg -3'
miRNA:   3'- ggUUGUGGGGAGu-GUgCgUUUCGGAg -5'
4019 5' -53.8 NC_001650.1 + 183630 0.66 0.97358
Target:  5'- gCCGGCcucgcCCCCUCAUuuGCAu-GUCUCu -3'
miRNA:   3'- -GGUUGu----GGGGAGUGugCGUuuCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 170316 0.66 0.97358
Target:  5'- -gGGCGCCUCUCucCGgGgGAAGCCUg -3'
miRNA:   3'- ggUUGUGGGGAGu-GUgCgUUUCGGAg -5'
4019 5' -53.8 NC_001650.1 + 51080 0.66 0.97358
Target:  5'- aCuuC-CCCCUCGcCGCGCucGGCCa- -3'
miRNA:   3'- gGuuGuGGGGAGU-GUGCGuuUCGGag -5'
4019 5' -53.8 NC_001650.1 + 175658 0.66 0.97358
Target:  5'- cCCGGCACCCCgcagggCugGgGCucuauCCUCa -3'
miRNA:   3'- -GGUUGUGGGGa-----GugUgCGuuuc-GGAG- -5'
4019 5' -53.8 NC_001650.1 + 137224 0.66 0.97358
Target:  5'- ----gACCCCUUggcgaACACGUGAGGCCcCg -3'
miRNA:   3'- gguugUGGGGAG-----UGUGCGUUUCGGaG- -5'
4019 5' -53.8 NC_001650.1 + 57168 0.66 0.97358
Target:  5'- cCCGGCGCCCCcucguccaUCGCgACGUGAucuucGcCCUCg -3'
miRNA:   3'- -GGUUGUGGGG--------AGUG-UGCGUUu----C-GGAG- -5'
4019 5' -53.8 NC_001650.1 + 131239 0.66 0.97358
Target:  5'- cCCGAgACCCUggugcccaACGCGCAggAGGCCc- -3'
miRNA:   3'- -GGUUgUGGGGag------UGUGCGU--UUCGGag -5'
4019 5' -53.8 NC_001650.1 + 146002 0.66 0.97358
Target:  5'- -uGACGCCCCUC--GCGgAGAGCUc- -3'
miRNA:   3'- ggUUGUGGGGAGugUGCgUUUCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.