miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4019 5' -53.8 NC_001650.1 + 141711 1.04 0.012392
Target:  5'- cCCAAC-CCCCUCACACGCAAAGCCUCg -3'
miRNA:   3'- -GGUUGuGGGGAGUGUGCGUUUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 31594 0.82 0.273302
Target:  5'- -gAACGCCCUUCACGgGCAgcGCCUCa -3'
miRNA:   3'- ggUUGUGGGGAGUGUgCGUuuCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 73576 0.79 0.384638
Target:  5'- uCCAACAgCCC-CAgGgGCAGGGCCUCg -3'
miRNA:   3'- -GGUUGUgGGGaGUgUgCGUUUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 62010 0.78 0.418991
Target:  5'- aCCAGC-UCCCUCGC-CGCGguccAGGCCUCg -3'
miRNA:   3'- -GGUUGuGGGGAGUGuGCGU----UUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 16949 0.78 0.454217
Target:  5'- aCCAAUauggcugACCCCUCAUGCGCAcaggGGGCUUCc -3'
miRNA:   3'- -GGUUG-------UGGGGAGUGUGCGU----UUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 101512 0.76 0.522158
Target:  5'- uCCAcCGCCCCUaGCuuGCGCAAcGCCUCa -3'
miRNA:   3'- -GGUuGUGGGGAgUG--UGCGUUuCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 22626 0.76 0.532057
Target:  5'- uUCAGCGCCCCcaGCGCGCGGGgggcgcguacGCCUCg -3'
miRNA:   3'- -GGUUGUGGGGagUGUGCGUUU----------CGGAG- -5'
4019 5' -53.8 NC_001650.1 + 183664 0.76 0.532057
Target:  5'- gCUGAC-CCCCUCAUGCGCAcaggGGGCUUCc -3'
miRNA:   3'- -GGUUGuGGGGAGUGUGCGU----UUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 14761 0.76 0.542023
Target:  5'- cCCAugACCCCUCugGCcaauaGAGGCCUa -3'
miRNA:   3'- -GGUugUGGGGAGugUGcg---UUUCGGAg -5'
4019 5' -53.8 NC_001650.1 + 105474 0.76 0.542023
Target:  5'- -aAGCACCUaUCACGCGCAcguagcuagaGGGCCUCa -3'
miRNA:   3'- ggUUGUGGGgAGUGUGCGU----------UUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 181468 0.76 0.542023
Target:  5'- cCCAugACCCCUCugGCcaauaGAGGCCUa -3'
miRNA:   3'- -GGUugUGGGGAGugUGcg---UUUCGGAg -5'
4019 5' -53.8 NC_001650.1 + 59206 0.75 0.582441
Target:  5'- cCCGGgAcCCCCUCugGCGaucgAGAGCCUCu -3'
miRNA:   3'- -GGUUgU-GGGGAGugUGCg---UUUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 170589 0.75 0.592652
Target:  5'- gCAGCGucCCCCUCAgCAgGCAgcGCCUCu -3'
miRNA:   3'- gGUUGU--GGGGAGU-GUgCGUuuCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 3882 0.75 0.592652
Target:  5'- gCAGCGucCCCCUCAgCAgGCAgcGCCUCu -3'
miRNA:   3'- gGUUGU--GGGGAGU-GUgCGUuuCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 74735 0.75 0.613154
Target:  5'- uCCGGCgACCCCggguggCACACGaAGAGCCUg -3'
miRNA:   3'- -GGUUG-UGGGGa-----GUGUGCgUUUCGGAg -5'
4019 5' -53.8 NC_001650.1 + 30169 0.74 0.633713
Target:  5'- uCCAGCACCuCCUCcagaACAccCGCGAGGCCc- -3'
miRNA:   3'- -GGUUGUGG-GGAG----UGU--GCGUUUCGGag -5'
4019 5' -53.8 NC_001650.1 + 13425 0.74 0.643995
Target:  5'- gCCAAUgagaACCCCaugC-CugGCAGGGCCUCu -3'
miRNA:   3'- -GGUUG----UGGGGa--GuGugCGUUUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 180132 0.74 0.643995
Target:  5'- gCCAAUgagaACCCCaugC-CugGCAGGGCCUCu -3'
miRNA:   3'- -GGUUG----UGGGGa--GuGugCGUUUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 69465 0.74 0.67475
Target:  5'- cCCGGCACCgccauuCCUCGCGCGCGuuGUCa- -3'
miRNA:   3'- -GGUUGUGG------GGAGUGUGCGUuuCGGag -5'
4019 5' -53.8 NC_001650.1 + 61426 0.73 0.684943
Target:  5'- uCCAGCACCUUgCGCAC-CAccGCCUCg -3'
miRNA:   3'- -GGUUGUGGGGaGUGUGcGUuuCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.