miRNA display CGI


Results 21 - 40 of 199 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4019 5' -53.8 NC_001650.1 + 131239 0.66 0.97358
Target:  5'- cCCGAgACCCUggugcccaACGCGCAggAGGCCc- -3'
miRNA:   3'- -GGUUgUGGGGag------UGUGCGU--UUCGGag -5'
4019 5' -53.8 NC_001650.1 + 175658 0.66 0.97358
Target:  5'- cCCGGCACCCCgcagggCugGgGCucuauCCUCa -3'
miRNA:   3'- -GGUUGUGGGGa-----GugUgCGuuuc-GGAG- -5'
4019 5' -53.8 NC_001650.1 + 59750 0.66 0.97358
Target:  5'- cCCGugGCCCC-CGgGgGCGAGGCg-- -3'
miRNA:   3'- -GGUugUGGGGaGUgUgCGUUUCGgag -5'
4019 5' -53.8 NC_001650.1 + 137224 0.66 0.97358
Target:  5'- ----gACCCCUUggcgaACACGUGAGGCCcCg -3'
miRNA:   3'- gguugUGGGGAG-----UGUGCGUUUCGGaG- -5'
4019 5' -53.8 NC_001650.1 + 125115 0.66 0.97331
Target:  5'- gCAGCACCCgC-CACAuaaguuccCGCAccccggagcucauAGGCCUCc -3'
miRNA:   3'- gGUUGUGGG-GaGUGU--------GCGU-------------UUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 155868 0.66 0.970796
Target:  5'- gCGAgACCCC-CAC-CGCGGGGuUCUCc -3'
miRNA:   3'- gGUUgUGGGGaGUGuGCGUUUC-GGAG- -5'
4019 5' -53.8 NC_001650.1 + 168126 0.66 0.970796
Target:  5'- cCCGGCAacagcuuaCCUCACACcaCAAGGCCg- -3'
miRNA:   3'- -GGUUGUgg------GGAGUGUGc-GUUUCGGag -5'
4019 5' -53.8 NC_001650.1 + 14211 0.66 0.970796
Target:  5'- gCCGcCGCUCCUCAcCACGU--GGCCc- -3'
miRNA:   3'- -GGUuGUGGGGAGU-GUGCGuuUCGGag -5'
4019 5' -53.8 NC_001650.1 + 83230 0.66 0.970796
Target:  5'- aUCAucCcCCCCUCugGCGUugauGAGGCaCUCg -3'
miRNA:   3'- -GGUu-GuGGGGAGugUGCG----UUUCG-GAG- -5'
4019 5' -53.8 NC_001650.1 + 424 0.66 0.970796
Target:  5'- aCAACACCCCagcCACuccccccgcccACGCAcacAAGCCc- -3'
miRNA:   3'- gGUUGUGGGGa--GUG-----------UGCGU---UUCGGag -5'
4019 5' -53.8 NC_001650.1 + 94051 0.66 0.970796
Target:  5'- gCCAGCGCCgCCg-AgACGCAgcuGAGCgUCu -3'
miRNA:   3'- -GGUUGUGG-GGagUgUGCGU---UUCGgAG- -5'
4019 5' -53.8 NC_001650.1 + 132021 0.66 0.970796
Target:  5'- cCCuGCACCUgCUCuACGCGCu-GGCCg- -3'
miRNA:   3'- -GGuUGUGGG-GAG-UGUGCGuuUCGGag -5'
4019 5' -53.8 NC_001650.1 + 1419 0.66 0.970796
Target:  5'- cCCGGCAacagcuuaCCUCACACcaCAAGGCCg- -3'
miRNA:   3'- -GGUUGUgg------GGAGUGUGc-GUUUCGGag -5'
4019 5' -53.8 NC_001650.1 + 180918 0.66 0.970796
Target:  5'- gCCGcCGCUCCUCAcCACGU--GGCCc- -3'
miRNA:   3'- -GGUuGUGGGGAGU-GUGCGuuUCGGag -5'
4019 5' -53.8 NC_001650.1 + 167131 0.66 0.970796
Target:  5'- aCAACACCCCagcCACuccccccgcccACGCAcacAAGCCc- -3'
miRNA:   3'- gGUUGUGGGGa--GUG-----------UGCGU---UUCGGag -5'
4019 5' -53.8 NC_001650.1 + 55733 0.66 0.970796
Target:  5'- uCCAuGCGCagCUCGCGCGCcgcGAAGCC-Ca -3'
miRNA:   3'- -GGU-UGUGggGAGUGUGCG---UUUCGGaG- -5'
4019 5' -53.8 NC_001650.1 + 16924 0.66 0.970796
Target:  5'- cCCGGCcucgcCCCCUCAUuuGCAu-GUCUCu -3'
miRNA:   3'- -GGUUGu----GGGGAGUGugCGUuuCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 141577 0.66 0.967808
Target:  5'- gCGugGCCCCggGCACGUguGucGCCUg -3'
miRNA:   3'- gGUugUGGGGagUGUGCG--UuuCGGAg -5'
4019 5' -53.8 NC_001650.1 + 122438 0.66 0.967808
Target:  5'- aCCugcGCGuCCCCUUugGCGaGAAGCC-Cg -3'
miRNA:   3'- -GGu--UGU-GGGGAGugUGCgUUUCGGaG- -5'
4019 5' -53.8 NC_001650.1 + 156587 0.66 0.967808
Target:  5'- gCCGACGCCCagCUCG-GCGCAgaacucccugcAGGCCaUCa -3'
miRNA:   3'- -GGUUGUGGG--GAGUgUGCGU-----------UUCGG-AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.