miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
4019 5' -53.8 NC_001650.1 + 59514 0.7 0.867369
Target:  5'- gCguGCugCCCUCGCGCauccucaugaGCAuAGCCUa -3'
miRNA:   3'- -GguUGugGGGAGUGUG----------CGUuUCGGAg -5'
4019 5' -53.8 NC_001650.1 + 178045 0.72 0.754545
Target:  5'- cCCAgaaccugaucACACCUCUCuuACAgGCAcAGCCUCc -3'
miRNA:   3'- -GGU----------UGUGGGGAG--UGUgCGUuUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 71566 0.72 0.764127
Target:  5'- uCCuGCACCCCUCG-GCGCAcGAGCUccUCa -3'
miRNA:   3'- -GGuUGUGGGGAGUgUGCGU-UUCGG--AG- -5'
4019 5' -53.8 NC_001650.1 + 56584 0.72 0.773591
Target:  5'- cUCAGCGCCCgagCUC-CAgGCGAAGCCa- -3'
miRNA:   3'- -GGUUGUGGG---GAGuGUgCGUUUCGGag -5'
4019 5' -53.8 NC_001650.1 + 32306 0.72 0.781999
Target:  5'- cCCGGCcaACCCCUUucugccguucaggGUAUGCGGGGCCUCg -3'
miRNA:   3'- -GGUUG--UGGGGAG-------------UGUGCGUUUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 121325 0.71 0.792126
Target:  5'- --cGCGCCgCCUUcCACGCGugcGGCCUCa -3'
miRNA:   3'- gguUGUGG-GGAGuGUGCGUu--UCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 75037 0.71 0.810079
Target:  5'- aCAAUACUCCUCugaaACGCAGAGCg-- -3'
miRNA:   3'- gGUUGUGGGGAGug--UGCGUUUCGgag -5'
4019 5' -53.8 NC_001650.1 + 155548 0.71 0.835766
Target:  5'- aCCAGCACggucuCCCUggcCGCGCGCucGGCCa- -3'
miRNA:   3'- -GGUUGUG-----GGGA---GUGUGCGuuUCGGag -5'
4019 5' -53.8 NC_001650.1 + 107359 0.7 0.85197
Target:  5'- uCUAucuCugCCCUCACGCGCucAGAGucguCCUCa -3'
miRNA:   3'- -GGUu--GugGGGAGUGUGCG--UUUC----GGAG- -5'
4019 5' -53.8 NC_001650.1 + 11338 0.72 0.754545
Target:  5'- cCCAgaaccugaucACACCUCUCuuACAgGCAcAGCCUCc -3'
miRNA:   3'- -GGU----------UGUGGGGAG--UGUgCGUuUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 114977 0.72 0.753581
Target:  5'- aCCAGCACCgacaggaUCUCGuuCAgGCAGAGCCUg -3'
miRNA:   3'- -GGUUGUGG-------GGAGU--GUgCGUUUCGGAg -5'
4019 5' -53.8 NC_001650.1 + 175522 0.73 0.695092
Target:  5'- cCCGAUGCCCCUCcCGCGCGc-GCCc- -3'
miRNA:   3'- -GGUUGUGGGGAGuGUGCGUuuCGGag -5'
4019 5' -53.8 NC_001650.1 + 31594 0.82 0.273302
Target:  5'- -gAACGCCCUUCACGgGCAgcGCCUCa -3'
miRNA:   3'- ggUUGUGGGGAGUGUgCGUuuCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 73576 0.79 0.384638
Target:  5'- uCCAACAgCCC-CAgGgGCAGGGCCUCg -3'
miRNA:   3'- -GGUUGUgGGGaGUgUgCGUUUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 16949 0.78 0.454217
Target:  5'- aCCAAUauggcugACCCCUCAUGCGCAcaggGGGCUUCc -3'
miRNA:   3'- -GGUUG-------UGGGGAGUGUGCGU----UUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 22626 0.76 0.532057
Target:  5'- uUCAGCGCCCCcaGCGCGCGGGgggcgcguacGCCUCg -3'
miRNA:   3'- -GGUUGUGGGGagUGUGCGUUU----------CGGAG- -5'
4019 5' -53.8 NC_001650.1 + 183664 0.76 0.532057
Target:  5'- gCUGAC-CCCCUCAUGCGCAcaggGGGCUUCc -3'
miRNA:   3'- -GGUUGuGGGGAGUGUGCGU----UUCGGAG- -5'
4019 5' -53.8 NC_001650.1 + 30169 0.74 0.633713
Target:  5'- uCCAGCACCuCCUCcagaACAccCGCGAGGCCc- -3'
miRNA:   3'- -GGUUGUGG-GGAG----UGU--GCGUUUCGGag -5'
4019 5' -53.8 NC_001650.1 + 69465 0.74 0.67475
Target:  5'- cCCGGCACCgccauuCCUCGCGCGCGuuGUCa- -3'
miRNA:   3'- -GGUUGUGG------GGAGUGUGCGUuuCGGag -5'
4019 5' -53.8 NC_001650.1 + 8815 0.73 0.695092
Target:  5'- cCCGAUGCCCCUCcCGCGCGc-GCCc- -3'
miRNA:   3'- -GGUUGUGGGGAGuGUGCGUuuCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.