miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
402 3' -54.1 AC_000011.1 + 10896 0.68 0.560501
Target:  5'- gCCCCagcagcaacUUcCAGCCACgACCGCc--GCGGc -3'
miRNA:   3'- -GGGG---------AA-GUUGGUGgUGGCGuuaCGCC- -5'
402 3' -54.1 AC_000011.1 + 20160 0.68 0.560501
Target:  5'- gUCCUUCAACgACUACCuCucgGCGGc -3'
miRNA:   3'- gGGGAAGUUGgUGGUGGcGuuaCGCC- -5'
402 3' -54.1 AC_000011.1 + 3645 0.68 0.549428
Target:  5'- gCUCUUCGucguuggacgcaGCUGCCGCCGCAGcUGCu- -3'
miRNA:   3'- gGGGAAGU------------UGGUGGUGGCGUU-ACGcc -5'
402 3' -54.1 AC_000011.1 + 14908 0.68 0.538423
Target:  5'- gCCgCC-UCGGCCgcuGCCACUGC--UGCGGc -3'
miRNA:   3'- -GG-GGaAGUUGG---UGGUGGCGuuACGCC- -5'
402 3' -54.1 AC_000011.1 + 10271 0.69 0.527496
Target:  5'- -aUCUaCGGCUACCACCGCAccAUGCu- -3'
miRNA:   3'- ggGGAaGUUGGUGGUGGCGU--UACGcc -5'
402 3' -54.1 AC_000011.1 + 10981 0.69 0.516652
Target:  5'- gCCCCgcucaCGGCgGCCGCgGCGGUcGUGGc -3'
miRNA:   3'- -GGGGaa---GUUGgUGGUGgCGUUA-CGCC- -5'
402 3' -54.1 AC_000011.1 + 17373 0.7 0.474244
Target:  5'- gCCCC---GAUCGCCGCgGCGAUGaUGGg -3'
miRNA:   3'- -GGGGaagUUGGUGGUGgCGUUAC-GCC- -5'
402 3' -54.1 AC_000011.1 + 5263 0.7 0.474244
Target:  5'- aCCCCUUCAccgugacggagACCACCcugaCGCGGacgcUGCGa -3'
miRNA:   3'- -GGGGAAGU-----------UGGUGGug--GCGUU----ACGCc -5'
402 3' -54.1 AC_000011.1 + 16974 0.7 0.463913
Target:  5'- aCCag-CAGCCGCCGCCGCAAg---- -3'
miRNA:   3'- gGGgaaGUUGGUGGUGGCGUUacgcc -5'
402 3' -54.1 AC_000011.1 + 17310 0.7 0.453701
Target:  5'- uCCCCaUC-AUCGCCGCgGCGAU-CGGg -3'
miRNA:   3'- -GGGGaAGuUGGUGGUGgCGUUAcGCC- -5'
402 3' -54.1 AC_000011.1 + 4885 0.7 0.433651
Target:  5'- cUCCC-UCAACUACCACCuGCAGc-CGGu -3'
miRNA:   3'- -GGGGaAGUUGGUGGUGG-CGUUacGCC- -5'
402 3' -54.1 AC_000011.1 + 23715 0.7 0.423822
Target:  5'- gCCCggCAgGCCACCAUCGUcaagGAUGCGc -3'
miRNA:   3'- gGGGaaGU-UGGUGGUGGCG----UUACGCc -5'
402 3' -54.1 AC_000011.1 + 23043 0.71 0.395152
Target:  5'- --gCUUCAGCUACCcCC-CGGUGCGGa -3'
miRNA:   3'- gggGAAGUUGGUGGuGGcGUUACGCC- -5'
402 3' -54.1 AC_000011.1 + 9488 0.71 0.385877
Target:  5'- aCCCCccCGGCCACCuggagaUGCGcgGCGGc -3'
miRNA:   3'- -GGGGaaGUUGGUGGug----GCGUuaCGCC- -5'
402 3' -54.1 AC_000011.1 + 12021 0.72 0.34171
Target:  5'- -----aCAGCCACCuccugaucCCGCGAUGCGGg -3'
miRNA:   3'- ggggaaGUUGGUGGu-------GGCGUUACGCC- -5'
402 3' -54.1 AC_000011.1 + 27297 0.73 0.325096
Target:  5'- cCCCCUUCGACgACgAuCCGCAcuccGUGGg -3'
miRNA:   3'- -GGGGAAGUUGgUGgU-GGCGUua--CGCC- -5'
402 3' -54.1 AC_000011.1 + 20022 0.74 0.278896
Target:  5'- cUCCCUcggCAACgACCugCGCAcgGaCGGg -3'
miRNA:   3'- -GGGGAa--GUUGgUGGugGCGUuaC-GCC- -5'
402 3' -54.1 AC_000011.1 + 17022 0.77 0.18124
Target:  5'- aCCgCCgcugCAACCACCccuGCCGCccuGGUGCGGa -3'
miRNA:   3'- -GG-GGaa--GUUGGUGG---UGGCG---UUACGCC- -5'
402 3' -54.1 AC_000011.1 + 19836 1.14 0.000402
Target:  5'- aCCCCUUCAACCACCACCGCAAUGCGGg -3'
miRNA:   3'- -GGGGAAGUUGGUGGUGGCGUUACGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.