miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
402 5' -57.9 AC_000011.1 + 8391 0.66 0.45087
Target:  5'- cACCGUcCCccGUUUCUucuugggcggcugGGGCGACGGg -3'
miRNA:   3'- aUGGCGaGGuaCGAGGA-------------CCCGUUGCC- -5'
402 5' -57.9 AC_000011.1 + 23612 0.66 0.422272
Target:  5'- cUGCCaGCUCCuccucGUGCUCCgcGGGCGucACa- -3'
miRNA:   3'- -AUGG-CGAGG-----UACGAGGa-CCCGU--UGcc -5'
402 5' -57.9 AC_000011.1 + 2970 0.66 0.422272
Target:  5'- cGCgGCUaCCAgaUGCUgaCCUGcGCGGCGGg -3'
miRNA:   3'- aUGgCGA-GGU--ACGA--GGACcCGUUGCC- -5'
402 5' -57.9 AC_000011.1 + 6539 0.67 0.406968
Target:  5'- cGCgCGCUCguagggacugaggggCGUGCcCCaGGGCAugGGa -3'
miRNA:   3'- aUG-GCGAG---------------GUACGaGGaCCCGUugCC- -5'
402 5' -57.9 AC_000011.1 + 25884 0.68 0.335899
Target:  5'- cUGCCGCUCCuucuuaccggUCUGGGUggUGGg -3'
miRNA:   3'- -AUGGCGAGGuacga-----GGACCCGuuGCC- -5'
402 5' -57.9 AC_000011.1 + 3687 0.68 0.332593
Target:  5'- cUGCCGCcagcgCCGUGCgcggaauggCCaUGGGCGcCGGc -3'
miRNA:   3'- -AUGGCGa----GGUACGa--------GG-ACCCGUuGCC- -5'
402 5' -57.9 AC_000011.1 + 23528 0.68 0.316422
Target:  5'- gGCCGCgUCGgaggugGCggggCUGGGCGGCGGg -3'
miRNA:   3'- aUGGCGaGGUa-----CGag--GACCCGUUGCC- -5'
402 5' -57.9 AC_000011.1 + 33830 0.69 0.285877
Target:  5'- cGCCGCUCCGucaagcugcUGCUCaggGGGUc-CGGg -3'
miRNA:   3'- aUGGCGAGGU---------ACGAGga-CCCGuuGCC- -5'
402 5' -57.9 AC_000011.1 + 27268 0.7 0.238098
Target:  5'- gGCCGggCCcugaggGUGCUCCUcGGGCAGCu- -3'
miRNA:   3'- aUGGCgaGG------UACGAGGA-CCCGUUGcc -5'
402 5' -57.9 AC_000011.1 + 19870 1.09 0.000283
Target:  5'- cUACCGCUCCAUGCUCCUGGGCAACGGg -3'
miRNA:   3'- -AUGGCGAGGUACGAGGACCCGUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.